6GKO

Mouse thymidylate synthase cocrystallized with dUMP and soaked in phenolphthalein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.839 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.193 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Thymidylate synthase fragment screening

Maj, P.Wilk, P.Jarmula, A.Weiss, M.S.Rode, W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Thymidylate synthase
A, B
307Mus musculusMutation(s): 0 
Gene Names: Tyms
EC: 2.1.1.45
Find proteins for P07607 (Mus musculus)
Go to UniProtKB:  P07607
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FGT
Query on FGT

Download SDF File 
Download CCD File 
A, B
3,3-bis(4-hydroxyphenyl)-2-benzofuran-1-one
phenolphthalein
C20 H14 O4
KJFMBFZCATUALV-UHFFFAOYSA-N
 Ligand Interaction
UMP
Query on UMP

Download SDF File 
Download CCD File 
A, B
2'-DEOXYURIDINE 5'-MONOPHOSPHATE
DUMP
C9 H13 N2 O8 P
JSRLJPSBLDHEIO-SHYZEUOFSA-N
 Ligand Interaction
DMS
Query on DMS

Download SDF File 
Download CCD File 
A, B
DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.839 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.193 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 160.701α = 90.00
b = 87.441β = 96.02
c = 68.515γ = 90.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
PHASERphasing
DENZOdata reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-06-05
    Type: Initial release