6FX7

Crystal structure of in vitro evolved Af1521

• PDB DOI: https://doi.org/10.2210/pdb6FX7/pdb

• Classification: SIGNALING PROTEIN
• Organism(s): Archaeoglobus fulgidus DSM 4304
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2018-03-08 Released: 2019-09-25 
• Deposition Author(s): Karlberg, T., Thorsell, A.G., Nowak, K., Hottiger, M.O., Schuler, H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.82 Å
• R-Value Free: 0.212 
• R-Value Work: 0.187 
• R-Value Observed: 0.188 

Literature

Crystal structure of in vitro evolved Af1521

Karlberg, T., Thorsell, A.G., Nowak, K., Hottiger, M.O., Schuler, H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 24.14 kDa 
• Atom Count: 1,642 
• Modelled Residue Count: 194 
• Deposited Residue Count: 215 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
[Protein ADP-ribosylglutamate] hydrolase AF_1521	A	215	Archaeoglobus fulgidus DSM 4304	Mutation(s): 9  Gene Names: AF_1521 EC: 3.2.2
UniProt
Find proteins for O28751 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)) Explore O28751  Go to UniProtKB:  O28751

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
AR6	B [auth A]	[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE C15 H23 N5 O14 P2 SRNWOUGRCWSEMX-ZQSHOCFMSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.82 Å
• R-Value Free: 0.212 
• R-Value Work: 0.187 
• R-Value Observed: 0.188 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 141.312	α = 90
b = 39.535	β = 97.7
c = 35.964	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
XDS	data reduction
autoPROC	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2019-09-25 
Deposition Author(s): Karlberg, T., Thorsell, A.G., Nowak, K., Hottiger, M.O., Schuler, H.

Revision History  

• Version 1.0: 2019-09-25
  Type: Initial release
  
• Version 1.1: 2024-01-17
  Changes: Data collection, Database references, Refinement description