6FVI | pdb_00006fvi

ASH / PapD-like domain of human CEP192 (PapD-like domain 7)

PDB DOI: https://doi.org/10.2210/pdb6FVI/pdb

Classification: CELL CYCLE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-03-02 Released: 2019-03-20
Deposition Author(s): Kovalevskiy, O.V., van Breugel, M.
Funding Organization(s): Medical Research Council (United Kingdom)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.00 Å
R-Value Free:
0.152 (Depositor), 0.152 (DCC)
R-Value Work:
0.136 (Depositor), 0.136 (DCC)
R-Value Observed:
0.137 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 6FVI

This is version 1.1 of the entry. See complete history.

Literature

ASH / PapD-like domain of human CEP192 (PapD-like domain 7)

Kovalevskiy, O., van Breugel, M.

To be published.

Macromolecule Content

Total Structure Weight: 16.99 kDa
Atom Count: 1,681
Modeled Residue Count: 142
Deposited Residue Count: 151
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Centrosomal protein of 192 kDa	A	151	Homo sapiens	Mutation(s): 0 Gene Names: CEP192, KIAA1569, PP8407
UniProt & NIH Common Fund Data Resources
Find proteins for Q8TEP8 (Homo sapiens) Explore Q8TEP8 Go to UniProtKB: Q8TEP8
PHAROS: Q8TEP8 GTEx: ENSG00000101639
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8TEP8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CL Query on CL Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.00 Å
R-Value Free: 0.152 (Depositor), 0.152 (DCC)
R-Value Work: 0.136 (Depositor), 0.136 (DCC)
R-Value Observed: 0.137 (Depositor)

Space Group: P 2 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.7	α = 90
b = 60.06	β = 90
c = 64.11	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
PDB_EXTRACT	data extraction
MOSFLM	data reduction
CRANK	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2019-03-20

Deposition Author(s):

Kovalevskiy, O.V.

van Breugel, M.

Funding Organization	Location	Grant Number
Medical Research Council (United Kingdom)	United Kingdom	MC_UP_1201/3

Revision History (Full details and data files)

Version 1.0: 2019-03-20
Type: Initial release
Version 1.1: 2024-11-13
Changes: Data collection, Database references, Refinement description, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.