6FJ1

Structure of the Ldtfm-avibactam carbamoyl enzyme


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.69 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.197 
  • R-Value Observed: 0.199 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Avibactam derivatives with dual activities in the inhibition of beta-lactamases and L,D-transpeptidases from mycobacteria

Edoo, Z.Iannazzo, L.Compain, F.van Tilbeurgh, H.Li de la Sierra Gallay, I.Fonvielle, M.Arthur, M.Etheve-Quelquejeu, M.Hugonnet, J.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
L,D-TRANSPEPTIDASEA, B, C258Enterococcus faeciumMutation(s): 0 
Gene Names: CQR42_01530
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NXL (Subject of Investigation/LOI)
Query on NXL

Download Ideal Coordinates CCD File 
E [auth A], I [auth B], O [auth C](2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide
C7 H13 N3 O6 S
WJDGWXPPFHLLNL-RITPCOANSA-N
 Ligand Interaction
P3G (Subject of Investigation/LOI)
Query on P3G

Download Ideal Coordinates CCD File 
D [auth A], J [auth B], P [auth C]3,6,9,12,15-PENTAOXAHEPTADECANE
C12 H26 O5
HYDWALOBQJFOMS-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

Download Ideal Coordinates CCD File 
F [auth A], G [auth A], K [auth B], L [auth B], M [auth B], N [auth B], Q [auth C], R [auth C]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download Ideal Coordinates CCD File 
H [auth A]CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.69 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.197 
  • R-Value Observed: 0.199 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 208.54α = 90
b = 131.97β = 90.14
c = 70.09γ = 90
Software Package:
Software NamePurpose
XDSdata reduction
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment  



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Fondation pour la recherche medicaleFranceECO20160736080
French National Research AgencyFranceANR-17-CE18-0010-03

Revision History  (Full details and data files)

  • Version 1.0: 2019-01-30
    Type: Initial release