6F27

NMR solution structure of non-bound [des-Arg10]-kallidin (DAKD)


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report


This is version 1.5 of the entry. See complete history

Literature

The molecular basis of subtype selectivity of human kinin G-protein-coupled receptors.

Joedicke, L.Mao, J.Kuenze, G.Reinhart, C.Kalavacherla, T.Jonker, H.R.A.Richter, C.Schwalbe, H.Meiler, J.Preu, J.Michel, H.Glaubitz, C.

(2018) Nat. Chem. Biol. 14: 284-290

  • DOI: 10.1038/nchembio.2551
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • G-protein-coupled receptors (GPCRs) are the most important signal transducers in higher eukaryotes. Despite considerable progress, the molecular basis of subtype-specific ligand selectivity, especially for peptide receptors, remains unknown. Here, by ...

    G-protein-coupled receptors (GPCRs) are the most important signal transducers in higher eukaryotes. Despite considerable progress, the molecular basis of subtype-specific ligand selectivity, especially for peptide receptors, remains unknown. Here, by integrating DNP-enhanced solid-state NMR spectroscopy with advanced molecular modeling and docking, the mechanism of the subtype selectivity of human bradykinin receptors for their peptide agonists has been resolved. The conserved middle segments of the bound peptides show distinct conformations that result in different presentations of their N and C termini toward their receptors. Analysis of the peptide-receptor interfaces reveals that the charged N-terminal residues of the peptides are mainly selected through electrostatic interactions, whereas the C-terminal segments are recognized via both conformations and interactions. The detailed molecular picture obtained by this approach opens a new gateway for exploring the complex conformational and chemical space of peptides and peptide analogs for designing GPCR subtype-selective biochemical tools and drugs.


    Organizational Affiliation

    Institute for Organic Chemistry and Chemical Biology, Goethe University Frankfurt, Frankfurt am Main, Germany.,Center for Structural Biology, Vanderbilt University, Nashville, USA.,Institute of Biophysical Chemistry, Goethe University Frankfurt, Frankfurt am Main, Germany.,Department of Molecular Membrane Biology, Max Planck Institute of Biophysics, Frankfurt am Main, Germany.,Centre for Biomolecular Magnetic Resonance, Goethe University Frankfurt, Frankfurt am Main, Germany.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DAKD
A
9Homo sapiensMutation(s): 0 
Gene Names: KNG1 (BDK, KNG)
Find proteins for P01042 (Homo sapiens)
Go to Gene View: KNG1
Go to UniProtKB:  P01042
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research FoundationGermanyG-NMR, SFB 807, GL 307/8-1, Macromolecular Complexes
State of HesseGermanyBMRZ
NIH and NSFUnited StatesR01 GM080403, R01 GM099842, R01 GM073151, CHE 1305874

Revision History 

  • Version 1.0: 2018-01-10
    Type: Initial release
  • Version 1.1: 2018-01-17
    Type: Database references
  • Version 1.2: 2018-01-24
    Type: Database references
  • Version 1.3: 2018-01-31
    Type: Author supporting evidence
  • Version 1.4: 2018-02-21
    Type: Database references
  • Version 1.5: 2019-05-08
    Type: Data collection