6F0K

Alternative complex III


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.87 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 2.1 of the entry. See complete history


Literature

Structural basis for energy transduction by respiratory alternative complex III.

Sousa, J.S.Calisto, F.Langer, J.D.Mills, D.J.Refojo, P.N.Teixeira, M.Kuhlbrandt, W.Vonck, J.Pereira, M.M.

(2018) Nat Commun 9: 1728-1728

  • DOI: https://doi.org/10.1038/s41467-018-04141-8
  • Primary Citation of Related Structures:  
    6F0K

  • PubMed Abstract: 
  • Electron transfer in respiratory chains generates the electrochemical potential that serves as energy source for the cell. Prokaryotes can use a wide range of electron donors and acceptors and may have alternative complexes performing the same catalytic reactions as the mitochondrial complexes ...

    Electron transfer in respiratory chains generates the electrochemical potential that serves as energy source for the cell. Prokaryotes can use a wide range of electron donors and acceptors and may have alternative complexes performing the same catalytic reactions as the mitochondrial complexes. This is the case for the alternative complex III (ACIII), a quinol:cytochrome c/HiPIP oxidoreductase. In order to understand the catalytic mechanism of this respiratory enzyme, we determined the structure of ACIII from Rhodothermus marinus at 3.9 Å resolution by single-particle cryo-electron microscopy. ACIII presents a so-far unique structure, for which we establish the arrangement of the cofactors (four iron-sulfur clusters and six c-type hemes) and propose the location of the quinol-binding site and the presence of two putative proton pathways in the membrane. Altogether, this structure provides insights into a mechanism for energy transduction and introduces ACIII as a redox-driven proton pump.


    Organizational Affiliation

    Departamento de Química e Bioquímica, Faculdade de Ciências, Universidade de Lisboa, 1749-016, Lisboa, Portugal. mpereira@itqb.unl.pt.



Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Cytochrome c family protein211Rhodothermus marinus DSM 4252Mutation(s): 0 
Gene Names: Rmar_0221
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Fe-S-cluster-containing hydrogenase1,039Rhodothermus marinus DSM 4252Mutation(s): 0 
Gene Names: Rmar_0222
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Polysulphide reductase NrfD484Rhodothermus marinus DSM 4252Mutation(s): 0 
Gene Names: Rmar_0223
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
ActD217Rhodothermus marinus DSM 4252Mutation(s): 0 
Gene Names: Rmar_0224
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Quinol:cytochrome c oxidoreductase monoheme cytochrome subunit209Rhodothermus marinus DSM 4252Mutation(s): 0 
Gene Names: Rmar_0225
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
ActF417Rhodothermus marinus DSM 4252Mutation(s): 0 
Gene Names: Rmar_0226
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
ActHG [auth H]182Rhodothermus marinus DSM 4252Mutation(s): 0 
Gene Names: Rmar_1979
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.87 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Fundacao para a ciencia e tecnologiaPortugalIF/01507/2015
Max Planck SocietyGermany--

Revision History  (Full details and data files)

  • Version 1.0: 2018-05-09
    Type: Initial release
  • Version 2.0: 2018-12-19
    Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary
  • Version 2.1: 2019-12-11
    Changes: Other