Estimation of Drug-Target Residence Times by tau-Random Acceleration Molecular Dynamics Simulations.
Kokh, D.B., Amaral, M., Bomke, J., Gradler, U., Musil, D., Buchstaller, H.P., Dreyer, M.K., Frech, M., Lowinski, M., Vallee, F., Bianciotto, M., Rak, A., Wade, R.C.(2018) J Chem Theory Comput 14: 3859-3869
- PubMed: 29768913 
- DOI: 10.1021/acs.jctc.8b00230
- Primary Citation of Related Structures:  
5LO5, 5LO6, 6EI5, 6EL5, 6ELN, 6ELO, 6ELP, 6EY8, 6EY9, 6EYA, 6EYB, 6F1N - PubMed Abstract: 
Drug-target residence time (τ), one of the main determinants of drug efficacy, remains highly challenging to predict computationally and, therefore, is usually not considered in the early stages of drug design. Here, we present an efficient computational method, τ-random acceleration molecular dynamics (τRAMD), for the ranking of drug candidates by their residence time and obtaining insights into ligand-target dissociation mechanisms ...