6EMM

17beta-hydroxysteroid dehydrogenase 14 variant T205 in complex with Salicylic acid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.47 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.167 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

X-ray Crystallographic Fragment screening and Hit Optimization

Bertoletti, N.Braun, F.Zara, L.Metz, A.Heine, A.Marchais-Oberwinkler, S.Klebe, G.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
17-beta-hydroxysteroid dehydrogenase 14
A
274Homo sapiensMutation(s): 0 
Gene Names: HSD17B14 (DHRS10, SDR3, SDR47C1)
EC: 1.1.1.-
Find proteins for Q9BPX1 (Homo sapiens)
Go to Gene View: HSD17B14
Go to UniProtKB:  Q9BPX1
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAD
Query on NAD

Download SDF File 
Download CCD File 
A
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
 Ligand Interaction
PG4
Query on PG4

Download SDF File 
Download CCD File 
A
TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
 Ligand Interaction
SAL
Query on SAL

Download SDF File 
Download CCD File 
A
2-HYDROXYBENZOIC ACID
SALICYLIC ACID
C7 H6 O3
YGSDEFSMJLZEOE-UHFFFAOYSA-N
 Ligand Interaction
PEG
Query on PEG

Download SDF File 
Download CCD File 
A
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.47 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.167 
  • Space Group: I 2 3
Unit Cell:
Length (Å)Angle (°)
a = 129.789α = 90.00
b = 129.789β = 90.00
c = 129.789γ = 90.00
Software Package:
Software NamePurpose
XDSdata scaling
PHENIXrefinement
XDSphasing
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research FoundationGermanyMA-5287/1-1
German Research FoundationGermanyKL-1204/15-1

Revision History 

  • Version 1.0: 2018-10-31
    Type: Initial release
  • Version 1.1: 2019-04-03
    Type: Data collection, Source and taxonomy