6ELM | pdb_00006elm

Crystal structure of the human WNK2 CCT1 domain

• PDB DOI: https://doi.org/10.2210/pdb6ELM/pdb

• Classification: STRUCTURAL GENOMICS
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2017-09-29 Released: 2017-12-20 
• Deposition Author(s): Pinkas, D.M., Bufton, J.C., Newman, J.A., Chalk, R., Burgess-Brown, N.A., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Bullock, A.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.14 Å
• R-Value Free: 
  0.168 (Depositor), 0.172 (DCC) 
• R-Value Work: 
  0.138 (Depositor), 0.142 (DCC) 
• R-Value Observed: 
  0.140 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of the human WNK2 CCT1 domain

Pinkas, D.M., Bufton, J.C., Newman, J.A., Chalk, R., Burgess-Brown, N.A., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Bullock, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 11.34 kDa 
• Atom Count: 1,009 
• Modeled Residue Count: 98 
• Deposited Residue Count: 98 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Serine/threonine-protein kinase WNK2	A	98	Homo sapiens	Mutation(s): 0  Gene Names: WNK2 EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y3S1 (Homo sapiens) Explore Q9Y3S1  Go to UniProtKB:  Q9Y3S1
PHAROS:  Q9Y3S1 GTEx:  ENSG00000165238

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.14 Å
• R-Value Free:  0.168 (Depositor), 0.172 (DCC) 
• R-Value Work:  0.138 (Depositor), 0.142 (DCC) 
• R-Value Observed: 0.140 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 28.197	α = 90
b = 46.492	β = 90
c = 71.296	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-12-20 
Deposition Author(s): Pinkas, D.M., Bufton, J.C., Newman, J.A., Chalk, R., Burgess-Brown, N.A., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Bullock, A.

Revision History  

• Version 1.0: 2017-12-20
  Type: Initial release
  
• Version 1.1: 2019-10-16
  Changes: Data collection
• Version 1.2: 2024-01-17
  Changes: Data collection, Database references, Refinement description