6EAZ

Apo structure of the mitochondrial calcium uniporter protein MICU2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.198 
  • R-Value Observed: 0.201 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Crystal structure of MICU2 and comparison with MICU1 reveal insights into the uniporter gating mechanism.

Kamer, K.J.Jiang, W.Kaushik, V.K.Mootha, V.K.Grabarek, Z.

(2019) Proc Natl Acad Sci U S A 116: 3546-3555

  • DOI: https://doi.org/10.1073/pnas.1817759116
  • Primary Citation of Related Structures:  
    6EAZ

  • PubMed Abstract: 

    The mitochondrial uniporter is a Ca 2+ -channel complex resident within the organelle's inner membrane. In mammalian cells the uniporter's activity is regulated by Ca 2+ due to concerted action of MICU1 and MICU2, two paralogous, but functionally distinct, EF-hand Ca 2+ -binding proteins. Here we present the X-ray structure of the apo form of Mus musculus MICU2 at 2.5-Å resolution. The core structure of MICU2 is very similar to that of MICU1. It consists of two lobes, each containing one canonical Ca 2+ -binding EF-hand (EF1, EF4) and one structural EF-hand (EF2, EF3). Two molecules of MICU2 form a symmetrical dimer stabilized by highly conserved hydrophobic contacts between exposed residues of EF1 of one monomer and EF3 of another. Similar interactions stabilize MICU1 dimers, allowing exchange between homo- and heterodimers. The tight EF1-EF3 interface likely accounts for the structural and functional coupling between the Ca 2+ -binding sites in MICU1, MICU2, and their complex that leads to the previously reported Ca 2+ -binding cooperativity and dominant negative effect of mutation of the Ca 2+ -binding sites in either protein. The N- and C-terminal segments of the two proteins are distinctly different. In MICU2 the C-terminal helix is significantly longer than in MICU1, and it adopts a more rigid structure. MICU2's C-terminal helix is dispensable in vitro for its interaction with MICU1 but required for MICU2's function in cells. We propose that in the MICU1-MICU2 oligomeric complex the C-terminal helices of both proteins form a central semiautonomous assembly which contributes to the gating mechanism of the uniporter.


  • Organizational Affiliation

    Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Calcium uptake protein 2, mitochondrial
A, B
379Mus musculusMutation(s): 0 
Gene Names: Micu2Efha1
UniProt & NIH Common Fund Data Resources
Find proteins for Q8CD10 (Mus musculus)
Explore Q8CD10 
Go to UniProtKB:  Q8CD10
IMPC:  MGI:1915764
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8CD10
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.198 
  • R-Value Observed: 0.201 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 112.562α = 90
b = 125.524β = 90
c = 72.145γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Howard Hughes Medical Institute (HHMI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2019-02-13
    Type: Initial release
  • Version 1.1: 2019-02-27
    Changes: Data collection, Database references
  • Version 1.2: 2019-03-13
    Changes: Data collection, Database references
  • Version 1.3: 2019-11-20
    Changes: Author supporting evidence
  • Version 1.4: 2024-03-13
    Changes: Data collection, Database references