6DYX

Structure of VHH R419 isolated from a pre-immune phage display library


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.176 
  • R-Value Observed: 0.177 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of a VHH isolated from a naive phage display library.

White, B.Huh, I.Brooks, C.L.

(2019) BMC Res Notes 12: 154-154

  • DOI: 10.1186/s13104-019-4197-0
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • To determine the X-ray structure and biophysical properties of a Camelid V H H isolated from a naïve phage display library.

    To determine the X-ray structure and biophysical properties of a Camelid V H H isolated from a naïve phage display library.


    Organizational Affiliation

    Department of Chemistry, California State University Fresno, 2555 E San Ramon Ave, Fresno, CA, 93740, USA. cbrooks@csufresno.edu.



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
VHH R419
D
124Vicugna pacosMutation(s): 0 
Protein Feature View
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download CCD File 
D
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
ACT
Query on ACT

Download CCD File 
D
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.176 
  • R-Value Observed: 0.177 
  • Space Group: P 65 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 58.281α = 90
b = 58.281β = 90
c = 155.358γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
SCALAdata scaling
PDB_EXTRACTdata extraction
xia2data reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-07-02 
  • Released Date: 2019-04-03 
  • Deposition Author(s): Brooks, C.L.

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesSC3GM112532

Revision History 

  • Version 1.0: 2019-04-03
    Type: Initial release
  • Version 1.1: 2020-01-01
    Changes: Author supporting evidence