Download MendeleyCrystal structure of glutamate racemase from Thermus Thermophilus in complex with Beta-chloro-D-alanine
Cooling, G.T., Vance, N.R., Spies, M.A.To be published.
6DLI
Crystal structure of glutamate racemase from Thermus thermophilus in complex with Beta-chloro-D-alanine
- PDB DOI: https://doi.org/10.2210/pdb6DLI/pdb
- Classification: ISOMERASE
- Organism(s): Thermus thermophilus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2018-06-01 Released: 2019-06-05
- Funding Organization(s): National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.244
- R-Value Work: 0.209
- R-Value Observed: 0.211
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glutamate racemase | 278 | Thermus thermophilus | Mutation(s): 0 Gene Names: murI, TTHA1643 EC: 5.1.1.3 |  | |
UniProt | |||||
Find proteins for Q5SHT7 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHT7 Go to UniProtKB: Q5SHT7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5SHT7 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| C2N Query on C2N | E [auth A], G [auth B], H [auth C], J [auth D] | 3-chloro-D-alanine C3 H6 Cl N O2 ASBJGPTTYPEMLP-UWTATZPHSA-N |  | ||
| GOL Query on GOL | F [auth A], I [auth C], K [auth D] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.244
- R-Value Work: 0.209
- R-Value Observed: 0.211
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 80.888 | α = 90 |
| b = 95.605 | β = 90 |
| c = 179.284 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2019-06-05 Deposition Author(s): Cooling, G.T., Vance, N.R., Spies, M.A.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI) | United States | R01 GM097373 |
Revision History (Full details and data files)
- Version 1.0: 2019-06-05
Type: Initial release - Version 1.1: 2019-12-18
Changes: Author supporting evidence - Version 1.2: 2023-10-11
Changes: Data collection, Database references, Refinement description
