6DBP

RNA-recognition motif 1 of human MSI2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.174 
  • R-Value Observed: 0.178 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Small-molecule targeting of MUSASHI RNA-binding activity in acute myeloid leukemia.

Minuesa, G.Albanese, S.K.Xie, W.Kazansky, Y.Worroll, D.Chow, A.Schurer, A.Park, S.M.Rotsides, C.Z.Taggart, J.Rizzi, A.Naden, L.N.Chou, T.Gourkanti, S.Cappel, D.Passarelli, M.C.Fairchild, L.Adura, C.Glickman, J.F.Schulman, J.Famulare, C.Patel, M.Eibl, J.K.Ross, G.M.Bhattacharya, S.Tan, D.S.Leslie, C.S.Beuming, T.Patel, D.J.Goldgur, Y.Chodera, J.D.Kharas, M.G.

(2019) Nat Commun 10: 2691-2691

  • DOI: https://doi.org/10.1038/s41467-019-10523-3
  • Primary Citation of Related Structures:  
    6DBP

  • PubMed Abstract: 

    The MUSASHI (MSI) family of RNA binding proteins (MSI1 and MSI2) contribute to a wide spectrum of cancers including acute myeloid leukemia. We find that the small molecule Ro 08-2750 (Ro) binds directly and selectively to MSI2 and competes for its RNA binding in biochemical assays. Ro treatment in mouse and human myeloid leukemia cells results in an increase in differentiation and apoptosis, inhibition of known MSI-targets, and a shared global gene expression signature similar to shRNA depletion of MSI2. Ro demonstrates in vivo inhibition of c-MYC and reduces disease burden in a murine AML leukemia model. Thus, we identify a small molecule that targets MSI's oncogenic activity. Our study provides a framework for targeting RNA binding proteins in cancer.


  • Organizational Affiliation

    Molecular Pharmacology Program, Experimental Therapeutics Center and Center for Stem Cell Biology, Memorial Sloan-Kettering Cancer Center, New York, NY, 10065, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
RNA-binding protein Musashi homolog 2
A, B
84Homo sapiensMutation(s): 0 
Gene Names: MSI2
UniProt & NIH Common Fund Data Resources
Find proteins for Q96DH6 (Homo sapiens)
Explore Q96DH6 
Go to UniProtKB:  Q96DH6
PHAROS:  Q96DH6
GTEx:  ENSG00000153944 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96DH6
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.174 
  • R-Value Observed: 0.178 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 30.317α = 90
b = 64.413β = 108.87
c = 38.387γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesP30 CA08748

Revision History  (Full details and data files)

  • Version 1.0: 2019-05-08
    Type: Initial release
  • Version 1.1: 2019-07-03
    Changes: Data collection, Database references
  • Version 1.2: 2019-12-04
    Changes: Author supporting evidence
  • Version 1.3: 2023-10-04
    Changes: Data collection, Database references, Refinement description