6DBD

Crystal Structure of VHH R326


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.755 Å
  • R-Value Free: 0.182 
  • R-Value Work: 0.160 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural basis of VHH-mediated neutralization of the food-borne pathogenListeria monocytogenes.

King, M.T.Huh, I.Shenai, A.Brooks, T.M.Brooks, C.L.

(2018) J. Biol. Chem. 293: 13626-13635


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
nanobody VHH R326
A, B, C, D
129N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
ACT
Query on ACT

Download SDF File 
Download CCD File 
D
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.755 Å
  • R-Value Free: 0.182 
  • R-Value Work: 0.160 
  • Space Group: P 65 2 2
Unit Cell:
Length (Å)Angle (°)
a = 97.701α = 90.00
b = 97.701β = 90.00
c = 243.800γ = 120.00
Software Package:
Software NamePurpose
xia2data reduction
PDB_EXTRACTdata extraction
PHENIXrefinement
PHENIXphasing
xia2data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
United StatesSC3GM112532

Revision History 

  • Version 1.0: 2018-07-18
    Type: Initial release
  • Version 1.1: 2018-07-25
    Type: Data collection, Database references
  • Version 1.2: 2018-09-12
    Type: Data collection, Database references, Source and taxonomy