6DBD

Crystal Structure of VHH R326


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.755 Å
  • R-Value Free: 0.182 
  • R-Value Work: 0.160 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural Basis of VHH mediated neutralization of the foodborne pathogenListeria monocytogenes.

Toride King, M.Huh, I.Shenai, A.Brooks, T.M.Brooks, C.L.

(2018) J. Biol. Chem. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
nanobody VHH R326
A, B, C, D
129N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
ACT
Query on ACT

Download SDF File 
Download CCD File 
D
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.755 Å
  • R-Value Free: 0.182 
  • R-Value Work: 0.160 
  • Space Group: P 65 2 2
Unit Cell:
Length (Å)Angle (°)
a = 97.701α = 90.00
b = 97.701β = 90.00
c = 243.800γ = 120.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXphasing
xia2data reduction
PDB_EXTRACTdata extraction
xia2data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
United StatesSC3GM112532

Revision History 

  • Version 1.0: 2018-07-18
    Type: Initial release
  • Version 1.1: 2018-07-25
    Type: Data collection, Database references