6CX4

V180A Mutant of Yeast PCNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.08 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.246 
  • R-Value Observed: 0.247 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Identification of New Mutations at the PCNA Subunit Interface that Block Translesion Synthesis.

Kondratick, C.M.Boehm, E.M.Dieckman, L.M.Powers, K.T.Sanchez, J.C.Mueting, S.R.Washington, M.T.

(2016) PLoS One 11: e0157023

  • DOI: https://doi.org/10.1371/journal.pone.0157023
  • Primary Citation of Related Structures:  
    6CX2, 6CX3, 6CX4

  • PubMed Abstract: 

    Proliferating cell nuclear antigen (PCNA) plays an essential role in DNA replication and repair by interacting with a large number of proteins involved in these processes. Two amino acid substitutions in PCNA, both located at the subunit interface, have previously been shown to block translesion synthesis (TLS), a pathway for bypassing DNA damage during replication. To better understand the role of the subunit interface in TLS, we used random mutagenesis to generate a set of 33 PCNA mutants with substitutions at the subunit interface. We assayed the full set of mutants for viability and sensitivity to ultraviolet (UV) radiation. We then selected a subset of 17 mutants and measured their rates of cell growth, spontaneous mutagenesis, and UV-induced mutagenesis. All except three of these 17 mutants were partially or completely defective in induced mutagenesis, which indicates a partial or complete loss of TLS. These results demonstrate that the integrity of the subunit interface of PCNA is essential for efficient TLS and that even conservative substitutions have the potential to disrupt this process.


  • Organizational Affiliation

    Department of Biochemistry, Carver College of Medicine, University of Iowa, Iowa City, Iowa, 52242, United States of America.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Proliferating cell nuclear antigen259Saccharomyces cerevisiae S288CMutation(s): 1 
Gene Names: POL30YBR088CYBR0811
UniProt
Find proteins for P15873 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P15873 
Go to UniProtKB:  P15873
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP15873
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.08 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.246 
  • R-Value Observed: 0.247 
  • Space Group: P 21 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 122.555α = 90
b = 122.555β = 90
c = 122.555γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
d*TREKdata reduction
d*TREKdata scaling
PHASERphasing
Blu-Icedata collection
Cootmodel building
PHENIXrefinement

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Released Date: 2018-04-11 
  • Deposition Author(s): Powers, K.T.

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesTGM081433
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM108027

Revision History  (Full details and data files)

  • Version 1.0: 2018-04-11
    Type: Initial release
  • Version 1.1: 2020-01-01
    Changes: Author supporting evidence
  • Version 1.2: 2020-10-07
    Changes: Derived calculations
  • Version 1.3: 2023-10-04
    Changes: Data collection, Database references, Refinement description