6CWL

Crystal structure of SpaA-SLH in complex with beta-D-GlcNAc-(1->3)-4,6-Pyr-beta-D-ManNAcOMe


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.215 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural basis of cell wall anchoring by SLH domains in Paenibacillus alvei.

Blackler, R.J.Lopez-Guzman, A.Hager, F.F.Janesch, B.Martinz, G.Gagnon, S.M.L.Haji-Ghassemi, O.Kosma, P.Messner, P.Schaffer, C.Evans, S.V.

(2018) Nat Commun 9: 3120-3120


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Surface (S-) layer glycoprotein
A, B
182Paenibacillus alveiMutation(s): 0 
Gene Names: spaA
Find proteins for C1JZ07 (Paenibacillus alvei)
Go to UniProtKB:  C1JZ07
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FHY
Query on FHY

Download SDF File 
Download CCD File 
A, B
(2S,4aR,6R,7S,8R,8aS)-7-(acetylamino)-6-({2-(acetylamino)-3-O-[2-(acetylamino)-2-deoxy-beta-D-glucopyranosyl]-4,6-O-[(1S)-1-carboxylic acidethylidene]-2-deoxy-beta-D-mannopyranosyl}oxy)-8-{[2-(acetylamino)-2-deoxy-beta-D-glucopyranosyl]oxy}-2-methylhexahydro-2H-pyrano[3,2-d][1,3]dioxine-2-carboxylic acid
C20 H32 N2 O13
HMXWDMHKOICGNH-MYXXRMNRSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.215 
  • Space Group: P 32 2 1
Unit Cell:
Length (Å)Angle (°)
a = 72.256α = 90.00
b = 72.256β = 90.00
c = 126.140γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
PDB_EXTRACTdata extraction
HKL-2000data reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Natural Sciences and Engineering Research Council (Canada)CanadaCGSD3-426678-2012
Austrian Science FundAustriaP22791-B12
Austrian Science FundAustriaP27374-B22

Revision History 

  • Version 1.0: 2018-08-15
    Type: Initial release
  • Version 1.1: 2018-08-22
    Type: Data collection, Database references