Download MendeleyCrystal Structure of Pathogenesis-related Protein 1G (PR-1G) Kinase Domain from Cacao
Tosarini, T.R., Profeta, G.S., dos Reis, C.V., Counago, R.M., Massirer, K.B., Mondego, J.M.C., Edwards, A.M., Elkins, J.M.To be published.
6CTH
Crystal Structure of Pathogenesis-related Protein 1G (PR-1G) Kinase Domain from Cacao
- PDB DOI: 10.2210/pdb6CTH/pdb
- Classification: TRANSFERASE/TRANSFERASE INHIBITOR
- Organism(s): Theobroma cacao
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2018-03-23 Released: 2018-04-11
- Funding Organization(s): Sao Paulo Research Foundation (FAPESP)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.238
- R-Value Work: 0.208
- R-Value Observed: 0.210
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Concanavalin A-like lectin protein kinase family protein | A | 309 | Theobroma cacao | Mutation(s): 0 Gene Names: TCM_042446 |  |
UniProt | |||||
Find proteins for A0A061FLD4 (Theobroma cacao) Explore A0A061FLD4 Go to UniProtKB: A0A061FLD4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A061FLD4 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FE7 Query on FE7 | B [auth A] | N-{(3Z)-2-oxo-3-[phenyl({4-[(piperidin-1-yl)methyl]phenyl}amino)methylidene]-2,3-dihydro-1H-indol-5-yl}ethanesulfonamide C29 H32 N4 O3 S GLDSKRNGVVYJAB-DQSJHHFOSA-N |  | Ligand Interaction | |
| ACT Query on ACT | D [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | Ligand Interaction | |
| MG Query on MG | C [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.238
- R-Value Work: 0.208
- R-Value Observed: 0.210
- Space Group: P 61 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 56.798 | α = 90 |
| b = 56.798 | β = 90 |
| c = 358.04 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-04-11 Deposition Author(s): Tosarini, T.R., Profeta, G.S., dos Reis, C.V., Counago, R.M., Massirer, K.B., Edwards, A.M., Elkins, J.M., Structural Genomics Consortium (SGC)
| Funding Organization | Location | Grant Number |
|---|---|---|
| Sao Paulo Research Foundation (FAPESP) | Brazil | 13/50724-5 |
Revision History (Full details and data files)
- Version 1.0: 2018-04-11
Type: Initial release - Version 1.1: 2020-01-01
Changes: Author supporting evidence
