Biological Assembly 1  

 3D View: Structure

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 6.63 kDa 
• Atom Count: 464 
• Modelled Residue Count: 61 
• Deposited Residue Count: 61 
• Unique protein chains: 1

6CPI

Solution structure of SH3 domain from Shank1

• DOI: 10.2210/pdb6CPI/pdb
• BMRB: 30436

• Classification: PROTEIN BINDING
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2018-03-13 Released: 2018-08-15 
• Deposition Author(s): Ishida, H., Vogel, H.J.
• Funding Organization(s): Natural Sciences and Engineering Research Council (NSERC, Canada)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 25 
• Selection Criteria: structures with the lowest energy 

Literature

Solution structures of the SH3 domains from Shank scaffold proteins and their interactions with Cav1.3 calcium channels.

Ishida, H., Skorobogatov, A., Yamniuk, A.P., Vogel, H.J.

(2018) FEBS Lett 592: 2786-2797

• PubMed: 30058071 
• DOI: 10.1002/1873-3468.13209
• Primary Citation of Related Structures:  
  6CPK, 6CPJ, 6CPI


• PubMed Abstract: 
  

Shank proteins are abundant scaffold proteins in the postsynaptic density (PSD) region of brain synapses. Mutations in Shank proteins are associated with autism, schizophrenia, and Alzheimer's disease. To gain insights into Shank protein interactions at the PSD, we determined the solution structures of the src homology 3 (SH3) domains of all three mammalian Shank proteins. Our findings indicate that they have identical and typical SH3 folding motifs, but unusual target-binding pockets. An investigation into the interaction between the Shank SH3 domains and the proline-rich region of the Cav1.3 calcium channel revealed an atypical interaction in which the highly acidic specificity binding pocket of the SH3 domains binds to a Cav1.3 region containing a cluster of three Arg residues. Our study provides insights into Shank SH3-mediated interactions.

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Organizational Affiliation: 

Department of Biological Sciences, University of Calgary, Canada.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
SH3 and multiple ankyrin repeat domains protein 1	A	61	Homo sapiens	Mutation(s): 0  Gene Names: SHANK1
Find proteins for Q9Y566 (Homo sapiens) Explore Q9Y566  Go to UniProtKB:  Q9Y566
NIH Common Fund Data Resources
PHAROS:  Q9Y566 GTEx:  ENSG00000161681

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 25 
• Selection Criteria: structures with the lowest energy 
• OLDERADO: 6CPI Olderado

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2018-03-13 
• Released Date: 2018-08-15 
Deposition Author(s): Ishida, H., Vogel, H.J.

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Funding Organization	Location	Grant Number
Natural Sciences and Engineering Research Council (NSERC, Canada)	Canada	--

Revision History  

• Version 1.0: 2018-08-15
  Type: Initial release
  
• Version 1.1: 2018-09-12
  Changes: Data collection, Database references
• Version 1.2: 2020-01-08
  Changes: Author supporting evidence, Data collection