6CNZ

Crystal Structure of Chorismate Mutase from Burkholderia thailandensis

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.164 
  • R-Value Observed: 0.166 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history. 


Literature

Crystal structure of chorismate mutase from Burkholderia thailandensis.

Asojo, O.A., Dranow, D.M., Serbzhinskiy, D., Subramanian, S., Staker, B., Edwards, T.E., Myler, P.J.

(2018) Acta Crystallogr F Struct Biol Commun 74: 294-299

  • DOI: 10.1107/S2053230X1800506X
  • Primary Citation of Related Structures:  
    6CNZ

  • PubMed Abstract: 

    • Burkholderia thailandensis is often used as a model for more virulent members of this genus of proteobacteria that are highly antibiotic-resistant and are potential agents of biological warfare that are infective by inhalation. As part of ongoing efforts to identify potential targets for the development of rational therapeutics, the structures of enzymes that are absent in humans, including that of chorismate mutase from B ...

    Burkholderia thailandensis is often used as a model for more virulent members of this genus of proteobacteria that are highly antibiotic-resistant and are potential agents of biological warfare that are infective by inhalation. As part of ongoing efforts to identify potential targets for the development of rational therapeutics, the structures of enzymes that are absent in humans, including that of chorismate mutase from B. thailandensis, have been determined by the Seattle Structural Genomics Center for Infectious Disease. The high-resolution structure of chorismate mutase from B. thailandensis was determined in the monoclinic space group P2 1 with three homodimers per asymmetric unit. The overall structure of each protomer has the prototypical AroQγ topology and shares conserved binding-cavity residues with other chorismate mutases, including those with which it has no appreciable sequence identity.

    Organizational Affiliation: 

    Seattle Structural Genomics Center for Infectious Disease (SSGCID), Seattle, Washington, USA.



Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Chorismate mutase
A, B, C, D, E, F
A, B, C, D, E, F
180Burkholderia thailandensisMutation(s): 0 
Gene Names: AQ477_14105, CRX59_12655, A8H37_21105, C6946_09440, GNZ25_02865
EC: 5.4.99.5
UniProt
Find proteins for A0A1B4JXW9 (Burkholderia thailandensis)
Explore A0A1B4JXW9 
Go to UniProtKB:  A0A1B4JXW9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1B4JXW9
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO
Download Ideal Coordinates CCD File 
BA [auth E],
M [auth B],
N [auth B],
O [auth B],
S [auth C],
BA [auth E],
M [auth B],
N [auth B],
O [auth B],
S [auth C],
T [auth C],
Z [auth D]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N		 Ligand Interaction
NO3
Query on NO3
Download Ideal Coordinates CCD File 
AA [auth E],
CA [auth E],
DA [auth F],
EA [auth F],
FA [auth F],
AA [auth E],
CA [auth E],
DA [auth F],
EA [auth F],
FA [auth F],
G [auth A],
H [auth A],
I [auth A],
J [auth B],
K [auth B],
L [auth B],
P [auth C],
Q [auth C],
R [auth C],
U [auth C],
V [auth C],
W [auth D],
X [auth D],
Y [auth D]
NITRATE ION
N O3
NHNBFGGVMKEFGY-UHFFFAOYSA-N		 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.164 
  • R-Value Observed: 0.166 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 51.71α = 90
b = 121.38β = 99.99
c = 88.67γ = 90
Software Package:
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
MOLREPphasing
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

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View more in-depth experimental data

Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-03-21
    Type: Initial release
  • Version 1.1: 2018-05-09
    Changes: Data collection, Database references
  • Version 1.2: 2018-05-16
    Changes: Data collection, Database references