Pyrimidine-specific Ribonucleoside Hydrolase RihB from Gardnerella vaginalis
Renner, N., Jacques, D.A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytidine/uridine-specific hydrolase | 315 | Gardnerella vaginalis 315-A | Mutation(s): 0  Gene Names: rihA, HMPREF9435_0920 EC: 3.2 | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CA Query on CA | E [auth A], H [auth B], L [auth C], O [auth D] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
CL Query on CL | F [auth A] G [auth A] I [auth B] J [auth B] K [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 83.07 | α = 90 |
b = 79.36 | β = 99.62 |
c = 115.99 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
Blu-Ice | data collection |
Aimless | data scaling |
PHASER | phasing |
PDB_EXTRACT | data extraction |
MOSFLM | data reduction |
Funding Organization | Location | Grant Number |
---|---|---|
National Health and Medical Research Council (NHMRC, Australia) | Australia | GNT1036521 |