6B8H

Mosaic model of yeast mitochondrial ATP synthase monomer


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.6 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Atomic model for the dimeric FO region of mitochondrial ATP synthase.

Guo, H.Bueler, S.A.Rubinstein, J.L.

(2017) Science 358: 936-940

  • DOI: 10.1126/science.aao4815
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Mitochondrial adenosine triphosphate (ATP) synthase produces the majority of ATP in eukaryotic cells, and its dimerization is necessary to create the inner membrane folds, or cristae, characteristic of mitochondria. Proton translocation through the m ...

    Mitochondrial adenosine triphosphate (ATP) synthase produces the majority of ATP in eukaryotic cells, and its dimerization is necessary to create the inner membrane folds, or cristae, characteristic of mitochondria. Proton translocation through the membrane-embedded FO region turns the rotor that drives ATP synthesis in the soluble F1 region. Although crystal structures of the F1 region have illustrated how this rotation leads to ATP synthesis, understanding how proton translocation produces the rotation has been impeded by the lack of an experimental atomic model for the FO region. Using cryo-electron microscopy, we determined the structure of the dimeric FO complex from Saccharomyces cerevisiae at a resolution of 3.6 angstroms. The structure clarifies how the protons travel through the complex, how the complex dimerizes, and how the dimers bend the membrane to produce cristae.


    Organizational Affiliation

    Hospital for Sick Children Research Institute, Toronto, Ontario M5G 0A4, Canada.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit 9, mitochondrial
1, 2, 3, 4, 5, 6, 7, 8, 9, 0, L, M, N, P, Q, R, S, T, U, J
76Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: OLI1 (ATP9, OLI3, PHO2)
Find proteins for P61829 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P61829
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
ATP synthase protein 8
A, V
48Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: ATP8 (AAP1)
Find proteins for P00856 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P00856
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit a
a, p
249Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: ATP6 (OLI2, OLI4, PHO1)
Find proteins for P00854 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P00854
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit 4, mitochondrial
b, q
209Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: ATP4
Find proteins for P05626 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P05626
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit d, mitochondrial
d, r
173Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: ATP7
Find proteins for P30902 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P30902
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit e, mitochondrial
e, s
49N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit f, mitochondrial
f, t
95Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: ATP17
Find proteins for Q06405 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q06405
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
AATP synthase subunit g
g, u
106N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit J, mitochondrial
i, w
59Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: ATP18
Find proteins for P81450 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P81450
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit K, mitochondrial
k, x
68Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: ATP19
Find proteins for P81451 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P81451
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit alpha, mitochondrial
K, B, C, n, W, X
510Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: ATP1
Find proteins for P07251 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P07251
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit beta, mitochondrial
D, E, F, Y, Z, c
478Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: ATP2
EC: 7.1.2.2
Find proteins for P00830 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P00830
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit gamma, mitochondrial
G, j
278Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: ATP3 (ATP3a, ATP3b)
Find proteins for P38077 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P38077
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit delta, mitochondrial
H, l
138Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: ATP16
Find proteins for Q12165 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q12165
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
ATP synthase catalytic sector F1 epsilon subunit
I, m
61Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for E9P9X4 (Saccharomyces cerevisiae)
Go to UniProtKB:  E9P9X4
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit 5, mitochondrial
O, o
195Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: ATP5 (OSCP)
Find proteins for P09457 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P09457
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit h
h, v
21N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ANP
Query on ANP

Download SDF File 
Download CCD File 
B, C, c, D, F, K, n, W, X, Y
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
B, C, c, D, F, K, n, W, X, Y
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
UNK
Query on UNK
e, g, h, s, u, v
L-PEPTIDE LINKINGC4 H9 N O2

--

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.6 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-01-17
    Type: Initial release