6B8H

Mosaic model of yeast mitochondrial ATP synthase monomer


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report



Literature

Atomic model for the dimeric FO region of mitochondrial ATP synthase.

Guo, H.Bueler, S.A.Rubinstein, J.L.

(2017) Science 358: 936-940

  • DOI: 10.1126/science.aao4815
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • Mitochondrial adenosine triphosphate (ATP) synthase produces the majority of ATP in eukaryotic cells, and its dimerization is necessary to create the inner membrane folds, or cristae, characteristic of mitochondria. Proton translocation through the m ...

    Mitochondrial adenosine triphosphate (ATP) synthase produces the majority of ATP in eukaryotic cells, and its dimerization is necessary to create the inner membrane folds, or cristae, characteristic of mitochondria. Proton translocation through the membrane-embedded F O region turns the rotor that drives ATP synthesis in the soluble F 1 region. Although crystal structures of the F 1 region have illustrated how this rotation leads to ATP synthesis, understanding how proton translocation produces the rotation has been impeded by the lack of an experimental atomic model for the F O region. Using cryo-electron microscopy, we determined the structure of the dimeric F O complex from Saccharomyces cerevisiae at a resolution of 3.6 angstroms. The structure clarifies how the protons travel through the complex, how the complex dimerizes, and how the dimers bend the membrane to produce cristae.


    Organizational Affiliation

    Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8, Canada.



Macromolecules

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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit 9, mitochondrial0, 1, 2, 3, 4, 5, 6, 7, 8, 9, J, L, M, N, P, Q, R, S, T, U76Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: OLI1ATP9OLI3PHO2Q0130
Find proteins for P61829 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
ATP synthase protein 8A, V48Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: ATP8AAP1Q0080
Find proteins for P00856 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit aa, p249Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: ATP6OLI2OLI4PHO1Q0085
Find proteins for P00854 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit 4, mitochondrialb, q209Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: ATP4YPL078CLPF7C
Find proteins for P05626 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit d, mitochondriald, r173Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: ATP7YKL016C
Find proteins for P30902 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit f, mitochondrialf, t95Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: ATP17YDR377WD9481.21
Find proteins for Q06405 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
AATP synthase subunit gg, u106Saccharomyces cerevisiae S288CMutation(s): 0 
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Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit J, mitochondriali, w59Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: ATP18YML081C-AYML081BC
Find proteins for P81450 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit K, mitochondrialk, x68Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: ATP19YOL077W-AYOL078BW
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Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit alpha, mitochondrialB, C, K, W, X, n510Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: ATP1YBL099WYBL0827
Find proteins for P07251 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit beta, mitochondrialD, E, F, Y, Z, c478Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: ATP2YJR121WJ2041
EC: 3.6.3.14 (PDB Primary Data), 7.1.2.2 (UniProt)
Find proteins for P00830 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit gamma, mitochondrialG, j278Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: ATP3ATP3aATP3bYBR039WYBR0408
Find proteins for P38077 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 14
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit delta, mitochondrialH, l138Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: ATP16YDL004WD2935YD8119.03
Find proteins for Q12165 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
ATP synthase catalytic sector F1 epsilon subunitI, m61Saccharomyces cerevisiaeMutation(s): 0 
Find proteins for E9P9X4 (Saccharomyces cerevisiae)
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Entity ID: 16
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit 5, mitochondrialO, o195Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: ATP5OSCPYDR298CD9740.11
Find proteins for P09457 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 17
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit hh, v21Saccharomyces cerevisiae S288CMutation(s): 0 
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit e, mitochondriale, s49Saccharomyces cerevisiae S288CMutation(s): 0 
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ANP
Query on ANP

Download CCD File 
B, C, D, F, K, W, X, Y, c, n
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
 Ligand Interaction
MG
Query on MG

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B, C, D, F, K, W, X, Y, c, n
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-01-17
    Type: Initial release