6B5X

Beta-Lactamase, unmixed shards crystal form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.194 
  • R-Value Observed: 0.196 

wwPDB Validation 3D Report Full Report



Literature

Enzyme intermediates captured "on the fly" by mix-and-inject serial crystallography.

Olmos, J.L.Pandey, S.Martin-Garcia, J.M.Calvey, G.Katz, A.Knoska, J.Kupitz, C.Hunter, M.S.Liang, M.Oberthuer, D.Yefanov, O.Wiedorn, M.Heyman, M.Holl, M.Pande, K.Barty, A.Miller, M.D.Stern, S.Roy-Chowdhury, S.Coe, J.Nagaratnam, N.Zook, J.Verburgt, J.Norwood, T.Poudyal, I.Xu, D.Koglin, J.Seaberg, M.H.Zhao, Y.Bajt, S.Grant, T.Mariani, V.Nelson, G.Subramanian, G.Bae, E.Fromme, R.Fung, R.Schwander, P.Frank, M.White, T.A.Weierstall, U.Zatsepin, N.Spence, J.Fromme, P.Chapman, H.N.Pollack, L.Tremblay, L.Ourmazd, A.Phillips, G.N.Schmidt, M.

(2018) BMC Biol 16: 59-59

  • DOI: 10.1186/s12915-018-0524-5
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • Ever since the first atomic structure of an enzyme was solved, the discovery of the mechanism and dynamics of reactions catalyzed by biomolecules has been the key goal for the understanding of the molecular processes that drive life on earth. Despite ...

    Ever since the first atomic structure of an enzyme was solved, the discovery of the mechanism and dynamics of reactions catalyzed by biomolecules has been the key goal for the understanding of the molecular processes that drive life on earth. Despite a large number of successful methods for trapping reaction intermediates, the direct observation of an ongoing reaction has been possible only in rare and exceptional cases.


    Organizational Affiliation

    Physics Department, University of Wisconsin-Milwaukee, 3135 N. Maryland Ave, Milwaukee, WI, 53211, USA. m-schmidt@uwm.edu.



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-lactamaseA, B, C, D267Mycobacterium tuberculosis H37RvMutation(s): 0 
Gene Names: blaCblaARv2068cMTCY49.07c
EC: 3.5.2.6
Find proteins for P9WKD3 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
Explore P9WKD3 
Go to UniProtKB:  P9WKD3
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download CCD File 
A, B, C, D
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.194 
  • R-Value Observed: 0.196 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 79.04α = 90
b = 97.19β = 108.71
c = 110.62γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
CrystFELdata reduction
CrystFELdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2017-09-29 
  • Released Date: 2018-06-27 
  • Deposition Author(s): Pandey, S.

Funding OrganizationLocationGrant Number
United States--

Revision History 

  • Version 1.0: 2018-06-27
    Type: Initial release