Download MendeleyTylHI in complex with native substrate 23-deoxy-5-O-mycaminosyl-tylonolide (23-DMTL)
DeMars, M.D., Sherman, D.H., Podust, L.M.To be published.
6B11
TylHI in complex with native substrate 23-deoxy-5-O-mycaminosyl-tylonolide (23-DMTL)
- DOI: 10.2210/pdb6B11/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Streptomyces fradiae
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2017-09-15 Released: 2018-12-19
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.99 Å
- R-Value Free: 0.240
- R-Value Work: 0.194
- R-Value Observed: 0.196
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 20-oxo-5-O-mycaminosyltylactone 23-monooxygenase | A, B | 440 | Streptomyces fradiae | Mutation(s): 0 Gene Names: tylH1, tylHI EC: 1.14.13.186 (PDB Primary Data), 1.14.15.34 (UniProt) |  |
Find proteins for Q9ZHQ1 (Streptomyces fradiae) Explore Q9ZHQ1 Go to UniProtKB: Q9ZHQ1 | |||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HEM Query on HEM | A, B | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L |  | Ligand Interaction | |
| CGM Query on CGM | A, B | (4R,5S,6S,7R,9R,11E,13E,15S,16R)-16-ethyl-4-hydroxy-5,9,13,15-tetramethyl-2,10-dioxo-7-(2-oxoethyl)-1-oxacyclohexadeca-11,13-dien-6-yl 3,6-dideoxy-3-(dimethylamino)-beta-D-glucopyranoside C31 H51 N O9 FERSDKADYZRIAA-CQGKBTLCSA-N |  | Ligand Interaction | |
| EDO Query on EDO | A, B | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| CSO Query on CSO | A,B | L-PEPTIDE LINKING | C3 H7 N O3 S |  | CYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.99 Å
- R-Value Free: 0.240
- R-Value Work: 0.194
- R-Value Observed: 0.196
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 63.73 | α = 90 |
| b = 109.24 | β = 90 |
| c = 150.06 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2017-09-15
- Released Date: 2018-12-19 Deposition Author(s): DeMars, M.D., Sherman, D.H., Podust, L.M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM078553 |
