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Download EndnoteStructure-based identification of uncompetitive inhibitors for Staphylococcus aureus pantothenate kinase.
Chen, Y., Antoshchenko, T., Strauss, E., Barnard, L., Huang, Y.H.To be published.
6AWJ
Staphylococcus aureus Type II pantothenate kinase in complex with ADP and pantothenate analog Deoxy-MeO-N5Pan with pantothenate present in reaction
- DOI: 10.2210/pdb6AWJ/pdb
- Classification: TRANSFERASE
- Organism(s): Staphylococcus aureus (strain NCTC 8325)
- Expression System: Escherichia coli
- Deposited: 2017-09-05 Released: 2018-09-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.5 Å
- R-Value Free: 0.265
- R-Value Work: 0.226
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Type II pantothenate kinase | A, B, C, D | 266 | Staphylococcus aureus (strain NCTC 8325) | Mutation(s): 0 Gene Names: coaW (coaA) EC: 2.7.1.33 |
Find proteins for Q2FWC7 (Staphylococcus aureus (strain NCTC 8325)) Go to UniProtKB: Q2FWC7 | ||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ADP Query on ADP | A, B, C, D | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N |  | Ligand Interaction | |
| N7G Query on N7G | A, C | (2R)-2-hydroxy-N-{3-[(5-methoxypentyl)amino]-3-oxopropyl}-3,3-dimethylbutanamide C15 H30 N2 O4 NABPYAZEODOCAF-ZDUSSCGKSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.5 Å
- R-Value Free: 0.265
- R-Value Work: 0.226
- Space Group: P 1 21 1
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 73.242 | α = 90.00 |
| b = 57.285 | β = 99.84 |
| c = 133.751 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| MOLREP | phasing |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| XDS | data scaling |
| REFMAC | refinement |
Entry History
Deposition Data
- Deposited Date: 2017-09-05
- Released Date: 2018-09-12
- Deposition Author(s): Chen, Y., Antoshchenko, T., Strauss, E., Barnard, L., Huang, Y.H.
