6AT7

Phenylalanine Ammonia-Lyase (PAL) from Sorghum bicolor

PDB DOI: https://doi.org/10.2210/pdb6AT7/pdb

Classification: LYASE
Organism(s): Sorghum bicolor
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2017-08-28 Released: 2018-01-31
Deposition Author(s): Jun, S.Y., Kang, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.49 Å
R-Value Free: 0.202
R-Value Work: 0.160
R-Value Observed: 0.162

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural and biochemical approach to alter the substrate specificity of Phenylalanine Ammonia-Lyase (PAL) from Sorghum bicolor

Jun, S.Y., Vermerris, W., Sattler, S.E., Kang, C.

To be published.

Macromolecule Content

Total Structure Weight: 151.35 kDa
Atom Count: 10,630
Modelled Residue Count: 1,364
Deposited Residue Count: 1,404
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phenylalanine ammonia-lyase	A, B	702	Sorghum bicolor	Mutation(s): 1 Gene Names: SORBI_004G220300, SORBI_3004G220300 EC: 4.3.1.24
UniProt
Find proteins for C5XXT8 (Sorghum bicolor) Explore C5XXT8 Go to UniProtKB: C5XXT8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	C5XXT8
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NH4 Query on NH4 Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth B]	C [auth A], D [auth B]	AMMONIUM ION H₄ N QGZKDVFQNNGYKY-UHFFFAOYSA-O		Ligand Interaction

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MDO Query on MDO	A, B	L-PEPTIDE LINKING	C₈ H₁₁ N₃ O₃		ALA, SER, GLY

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.49 Å
R-Value Free: 0.202
R-Value Work: 0.160
R-Value Observed: 0.162
Space Group: I 4₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 126.304	α = 90
b = 126.304	β = 90
c = 337.477	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2018-01-31

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2018-01-31
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.