6AKZ | pdb_00006akz

Crystal structure of GlcNAc Inducible Gene 2, GIG2 (DUF1479) from Candida albicans

PDB DOI: https://doi.org/10.2210/pdb6AKZ/pdb

Classification: OXIDOREDUCTASE
Organism(s): Candida albicans SC5314
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-09-05 Released: 2019-09-11
Deposition Author(s): Gautam, G., Rani, P., Dutta, A., Gourinath, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.69 Å
R-Value Free:
0.216 (Depositor), 0.211 (DCC)
R-Value Work:
0.181 (Depositor)
R-Value Observed:
0.182 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of Gig2 protein from Candida albicans provides a structural insight into DUF1479 family oxygenases.

Rani, P., Gautam, G., Anwar, T., Gourinath, S., Datta, A.

(2020) Int J Biol Macromol 150: 1272-1280

PubMed: 31743702 Search on PubMed
DOI: https://doi.org/10.1016/j.ijbiomac.2019.10.138
Primary Citation Related Structures:
6AKZ

Organizational Affiliation

Special Centre for Molecular Medicine, Jawaharlal Nehru University, New Delhi, India.

Macromolecule Content

Total Structure Weight: 54.95 kDa
Atom Count: 3,878
Modeled Residue Count: 451
Deposited Residue Count: 476
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GlcNAc Inducible Gene 2, GIG2	A	476	Candida albicans SC5314	Mutation(s): 0 Gene Names: orf19.4783, CAALFM_C109240CA
UniProt
Find proteins for A0A1D8PEJ2 (Candida albicans (strain SC5314 / ATCC MYA-2876)) Explore A0A1D8PEJ2 Go to UniProtKB: A0A1D8PEJ2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A1D8PEJ2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FE Query on FE Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.69 Å
R-Value Free: 0.216 (Depositor), 0.211 (DCC)
R-Value Work: 0.181 (Depositor)
R-Value Observed: 0.182 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 60.652	α = 90
b = 54.545	β = 105.61
c = 74.85	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2019-09-11

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2019-09-11
Type: Initial release
Version 1.1: 2020-03-25
Changes: Database references
Version 1.2: 2020-04-15
Changes: Database references
Version 1.3: 2023-11-22
Changes: Data collection, Database references, Derived calculations, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.