6AI7

Mandelate oxidase mutant-Y128F with the C4a-OH-FMN adduct


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.07 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.205 
  • R-Value Observed: 0.207 

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Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

The crystal structure of Mandelate oxidase mutant-Y128F with the C4a-OH-FMN adduct

Li, T.L.Lin, K.H.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
4-hydroxymandelate oxidaseA360Amycolatopsis orientalisMutation(s): 1 
Gene Names: hmo
EC: 1.1.3.46
UniProt
Find proteins for O52792 (Amycolatopsis orientalis)
Explore O52792 
Go to UniProtKB:  O52792
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
9Q6 (Subject of Investigation/LOI)
Query on 9Q6

Download Ideal Coordinates CCD File 
B [auth A]1-deoxy-1-[(4aS)-4a-hydroxy-7,8-dimethyl-2,4-dioxo-3,4,4a,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-5-O-phosphono-D-ribitol
C17 H23 N4 O10 P
XVRDTKNEVFQDDQ-LKQDWFRTSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.07 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.205 
  • R-Value Observed: 0.207 
  • Space Group: I 4 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 138.576α = 90
b = 138.576β = 90
c = 107.889γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment  



Entry History 

Deposition Data

  • Deposited Date: 2018-08-21 
  • Released Date: 2019-08-28 
  • Deposition Author(s): Li, T.L., Lin, K.H.

Revision History  (Full details and data files)

  • Version 1.0: 2019-08-28
    Type: Initial release