6ABR

Actin interacting protein 5 (Aip5, wild type)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.262 
  • R-Value Work: 0.226 
  • R-Value Observed: 0.230 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Polarisome scaffolder Spa2-mediated macromolecular condensation of Aip5 for actin polymerization.

Xie, Y.Sun, J.Han, X.Tursic-Wunder, A.Toh, J.D.W.Hong, W.Gao, Y.G.Miao, Y.

(2019) Nat Commun 10: 5078-5078

  • DOI: https://doi.org/10.1038/s41467-019-13125-1
  • Primary Citation of Related Structures:  
    6ABR, 6ABS

  • PubMed Abstract: 

    A multiprotein complex polarisome nucleates actin cables for polarized cell growth in budding yeast and filamentous fungi. However, the dynamic regulations of polarisome proteins in polymerizing actin under physiological and stress conditions remains unknown. We identify a previously functionally unknown polarisome member, actin-interacting-protein 5 (Aip5), which promotes actin assembly synergistically with formin Bni1. Aip5-C terminus is responsible for its activities by interacting with G-actin and Bni1. Through N-terminal intrinsically disordered region, Aip5 forms high-order oligomers and generate cytoplasmic condensates under the stresses conditions. The molecular dynamics and reversibility of Aip5 condensates are regulated by scaffolding protein Spa2 via liquid-liquid phase separation both in vitro and in vivo. In the absence of Spa2, Aip5 condensates hamper cell growth and actin cable structures under stress treatment. The present study reveals the mechanisms of actin assembly for polarity establishment and the adaptation in stress conditions to protect actin assembly by protein phase separation.


  • Organizational Affiliation

    School of Chemical and Biomedical Engineering, Nanyang Technological University, Singapore, 637459, Singapore.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Actin binding protein
A, B
124Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: YFR016C
UniProt
Find proteins for P43597 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P43597 
Go to UniProtKB:  P43597
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP43597
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.262 
  • R-Value Work: 0.226 
  • R-Value Observed: 0.230 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 32.573α = 90
b = 82.775β = 107.37
c = 34.278γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-11-20
    Type: Initial release
  • Version 1.1: 2024-03-27
    Changes: Data collection, Database references