6NLC

Crystal structure of HMCES SRAP domain in complex with 6-nucleotide 3' overhang DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.221 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of HMCES SRAP domain in complex with 3' overhang DNA

Halabelian, L.Li, Y.Ravichandran, M.Zeng, H.Bountra, C.Edwards, A.M.Arrowsmith, C.H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein
A
277Homo sapiensMutation(s): 0 
Gene Names: HMCES (C3orf37, DC12, SRAPD1)
Find proteins for Q96FZ2 (Homo sapiens)
Go to Gene View: HMCES
Go to UniProtKB:  Q96FZ2
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(*CP*CP*AP*GP*AP*CP*GP*TP*TP*G)-3')B12synthetic construct
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (5'-D(*GP*TP*CP*TP*GP*G)-3')C6synthetic construct
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
UNX
Query on UNX

Download SDF File 
Download CCD File 
A, B
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, C
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.221 
  • Space Group: I 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 55.863α = 90.00
b = 52.060β = 93.11
c = 148.309γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-01-30
    Type: Initial release