5ZZG

X-ray structure of F43Y/H64D sperm whale myoglobin in complex with TCP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.185 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

A Rationally Designed Myoglobin Exhibits a Catalytic Dehalogenation Efficiency More than 1000-Fold That of a Native Dehaloperoxidase

Yin, L.L.Yuan, H.Liu, C.He, B.Gao, S.Q.Wen, G.B.Tan, X.Lin, Y.W.

(2018) Acs Catalysis 8: 9619-9624


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Myoglobin
A
153Physeter macrocephalusMutation(s): 2 
Gene Names: MB
Find proteins for P02185 (Physeter macrocephalus)
Go to Gene View: MB
Go to UniProtKB:  P02185
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
T6C
Query on T6C

Download SDF File 
Download CCD File 
A
2,4,6-trichlorophenol
C6 H3 Cl3 O
LINPIYWFGCPVIE-UHFFFAOYSA-N
 Ligand Interaction
HEM
Query on HEM

Download SDF File 
Download CCD File 
A
PROTOPORPHYRIN IX CONTAINING FE
HEME
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.185 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 39.899α = 90.00
b = 49.477β = 90.00
c = 77.333γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data scaling
HKL-3000phasing
REFMACrefinement
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-06-01 
  • Released Date: 2018-10-03 
  • Deposition Author(s): Yuan, H., Lin, Y.W.

Revision History 

  • Version 1.0: 2018-10-03
    Type: Initial release