5ZY9

Structural basis for a tRNA synthetase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.167 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural basis for inhibition of translational functions on a tRNA synthetase

Zhang, J.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Threonyl-tRNA synthaseA [auth C], B [auth D], C [auth E]406Phytophthora sojaeMutation(s): 0 
EC: 6.1.1.3
UniProt
Find proteins for G3FIN0 (Phytophthora sojae)
Explore G3FIN0 
Go to UniProtKB:  G3FIN0
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
2CR (Subject of Investigation/LOI)
Query on 2CR

Download Ideal Coordinates CCD File 
D [auth C], F [auth D], H [auth E](1R,2R)-2-[(2S,4E,6E,8R,9S,11R,13S,15S,16S)-7-cyano-8,16-dihydroxy-9,11,13,15-tetramethyl-18-oxooxacyclooctadeca-4,6-dien-2-yl]cyclopentanecarboxylic acid
C28 H43 N O6
OJCKRNPLOZHAOU-RSXXJMTFSA-N
 Ligand Interaction
ZN
Query on ZN

Download Ideal Coordinates CCD File 
E [auth C], G [auth D], I [auth E]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.167 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 105.212α = 90
b = 109.633β = 99.46
c = 133.766γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

  • Deposited Date: 2018-05-23 
  • Released Date: 2019-06-12 
  • Deposition Author(s): Zhang, J.

Revision History  (Full details and data files)

  • Version 1.0: 2019-06-12
    Type: Initial release