5ZWU | pdb_00005zwu

Crystal structure of recombination mediator protein RecF

PDB DOI: https://doi.org/10.2210/pdb5ZWU/pdb

Classification: RECOMBINATION
Organism(s): Thermus thermophilus HB8
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2018-05-16 Released: 2019-05-22
Deposition Author(s): Chaudhary, S.K., Sekar, K., Jeyakanthan, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.58 Å
R-Value Free:
0.220 (Depositor), 0.228 (DCC)
R-Value Work:
0.170 (Depositor), 0.184 (DCC)
R-Value Observed:
0.173 (Depositor)

Starting Model: experimental
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This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of recombination mediator protein RecF

Chaudhary, S.K., Sekar, K., Jeyakanthan, J.

To be published.

Macromolecule Content

Total Structure Weight: 37.85 kDa
Atom Count: 2,862
Modeled Residue Count: 341
Deposited Residue Count: 343
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA replication and repair protein RecF	A	343	Thermus thermophilus HB8	Mutation(s): 0 Gene Names: recF, TTHA0264
UniProt
Find proteins for Q5SLM9 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SLM9 Go to UniProtKB: Q5SLM9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5SLM9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.58 Å
R-Value Free: 0.220 (Depositor), 0.228 (DCC)
R-Value Work: 0.170 (Depositor), 0.184 (DCC)
R-Value Observed: 0.173 (Depositor)

Space Group: P 2 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 37.7	α = 90
b = 74.38	β = 90
c = 153.359	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-3000	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2019-05-22

Deposition Author(s):

Chaudhary, S.K.

Jeyakanthan, J.

Revision History (Full details and data files)

Version 1.0: 2019-05-22
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description
Version 1.2: 2024-11-20
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.