5ZL2 | pdb_00005zl2

Crystal structure of Bourbon virus envelope glycoprotein at pH8.0

PDB DOI: https://doi.org/10.2210/pdb5ZL2/pdb

Classification: VIRAL PROTEIN
Organism(s): Bourbon virus
Expression System: Baculovirus expression vector pFastBac1-HM
Mutation(s): No

Deposited: 2018-03-26 Released: 2019-03-27
Deposition Author(s): Qi, J.X., Peng, R.C., Wu, Y., Gao, F.
Funding Organization(s): National Natural Science Foundation of China

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free:
0.240 (Depositor), 0.184 (DCC)
R-Value Work:
0.201 (Depositor), 0.159 (DCC)
R-Value Observed:
0.304 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 5ZL2

This is version 1.1 of the entry. See complete history.

Literature

The postfusion structure of human-infecting Bourbon virus envelope glycoprotein implicates the host adaptation properties of thogotoviruses

Bai, C.Z., Qi, J.X., Wu, Y., Wang, X.J., Gao, G.F., Peng, R.C., Gao, F.

To be published.

Macromolecule Content

Total Structure Weight: 158.79 kDa
Atom Count: 9,383
Modeled Residue Count: 1,164
Deposited Residue Count: 1,401
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Envelope glycoprotein	A, B, C	467	Bourbon virus	Mutation(s): 0
UniProt
Find proteins for A0A140H4W8 (Bourbon virus) Explore A0A140H4W8 Go to UniProtKB: A0A140H4W8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A140H4W8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free: 0.240 (Depositor), 0.184 (DCC)
R-Value Work: 0.201 (Depositor), 0.159 (DCC)
R-Value Observed: 0.304 (Depositor)

Space Group: P 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 102.255	α = 90
b = 102.255	β = 90
c = 134.472	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2019-03-27

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	31741041
National Natural Science Foundation of China	China	81301465

Revision History (Full details and data files)

Version 1.0: 2019-03-27
Type: Initial release
Version 1.1: 2024-10-23
Changes: Data collection, Database references, Derived calculations, Structure summary