5ZFO

NMR structure of IRD12 from Capsicum annum.


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 11 
  • Selection Criteria: target function 

wwPDB Validation 3D Report Full Report


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Literature

NMR structure and dynamics of inhibitory repeat domain variant 12, a plant protease inhibitor from Capsicum annuum, and its structural relationship to other plant protease inhibitors.

Gartia, J.Anangi, R.Joshi, R.S.Giri, A.P.King, G.F.Barnwal, R.P.Chary, K.V.R.

(2019) J.Biomol.Struct.Dyn. --: 1-10

  • DOI: 10.1080/07391102.2019.1607559

  • PubMed Abstract: 
  • Although several plant protease inhibitors have been structurally characterized using X-ray crystallography, very few have been studied using NMR techniques. Here, we report an NMR study of the solution structure and dynamics of an inhibitory repeat ...

    Although several plant protease inhibitors have been structurally characterized using X-ray crystallography, very few have been studied using NMR techniques. Here, we report an NMR study of the solution structure and dynamics of an inhibitory repeat domain (IRD) variant 12 from the wound-inducible Pin-II type proteinase inhibitor from Capsicum annuum. IRD variant 12 (IRD12) showed strong anti-metabolic activity against the Lepidopteran insect pest, Helicoverpa armigera. The NMR-derived three-dimensional structure of IRD12 reveals a three-stranded anti-parallel β-sheet rigidly held together by four disulfide bridges and shows structural homology with known IRDs. It is interesting to note that the IRD12 structure containing ∼75% unstructured part still shows substantial amount of rigidity of N-H bond vectors with respect to its molecular motion. Communicated by Ramaswamy H. Sarma.


    Organizational Affiliation

    e Department of Biophysics , Panjab University , Chandigarh , India.,a Center for Interdisciplinary Sciences, Tata Institute of Fundamental Research , Gopanpally , Hyderabad , India.,g Indian Institute of Science Education and Research , Berhampur , Odisha , India.,c Institute of Bioinformatics and Biotechnology (IBB), Savitribai Phule Pune University , Pune , India.,d CSIR - National Chemical Laboratory , Pune , India.,b Institute for Molecular Bioscience, The University of Queensland , Brisbane , QLD , Australia.,f Department of Chemical Sciences , Tata Institute of Fundamental Research , Colaba , Mumbai , India.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Pin-II type proteinase inhibitor 38
A
50Capsicum annuumMutation(s): 0 
Find proteins for T1PZ86 (Capsicum annuum)
Go to UniProtKB:  T1PZ86
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 11 
  • Selection Criteria: target function 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-05-15
    Type: Initial release