5ZDH

CryoEM structure of ETEC Pilotin-Secretin AspS-GspD complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural insight into the assembly of the type II secretion system pilotin-secretin complex from enterotoxigenic Escherichia coli.

Yin, M.Yan, Z.Li, X.

(2018) Nat Microbiol 3: 581-587

  • DOI: https://doi.org/10.1038/s41564-018-0148-0
  • Primary Citation of Related Structures:  
    5ZDH

  • PubMed Abstract: 

    Secretin is a large outer-membrane channel found in secretion systems of Gram-negative bacteria, facilitating the last step for transfer of proteins into the extracellular environment. In the type II secretion system, a lipoprotein called pilotin is essential to bind and target its corresponding secretin to the outer membrane. However, there is only limited structural information available about the interaction and assembly of the pilotin-secretin complex. Here we report the first near-atomic-resolution structure of a full-length Vibrio-type pilotin-secretin (AspS-GspD) complex from enterotoxigenic Escherichia coli by cryo-electron microscopy, which reveals the detailed assembly mode of the full-length pilotin-secretin complex. The AspS subunits attach to the secretin channel surface with a 15:15 stoichiometric ratio to GspD subunits, and insert their amino terminus into the outer membrane. The AspS subunits interact with all three secondary structural elements of the S domain of GspD, including strong interaction with the carboxy-terminal α-helix and weak interactions with another two elements, an α-helix and a loop. These structural and biochemical details provide a deeper insight to pilotin-secretin interaction and their assembly mode.


  • Organizational Affiliation

    Key Laboratory of Protein Sciences (Tsinghua University), Ministry of Education, Beijing, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Type II secretion system protein D
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O
646Escherichia coli ETEC H10407Mutation(s): 0 
Gene Names: ETEC_3237
Membrane Entity: Yes 
UniProt
Find proteins for E3PJ86 (Escherichia coli O78:H11 (strain H10407 / ETEC))
Explore E3PJ86 
Go to UniProtKB:  E3PJ86
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE3PJ86
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Type II secretion system lipoprotein112Escherichia coli ETEC H10407Mutation(s): 0 
Gene Names: ETEC_3239
Membrane Entity: Yes 
UniProt
Find proteins for E3PJ88 (Escherichia coli O78:H11 (strain H10407 / ETEC))
Explore E3PJ88 
Go to UniProtKB:  E3PJ88
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE3PJ88
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-04-18
    Type: Initial release
  • Version 1.1: 2018-06-20
    Changes: Data collection, Database references