5Z2Q

Vgll1-TEAD4 core complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.74 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.203 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural and functional similarity between the Vgll1-TEAD and the YAP-TEAD complexes.

Pobbati, A.V.Chan, S.W.Lee, I.Song, H.Hong, W.

(2012) Structure 20: 1135-1140

  • DOI: https://doi.org/10.1016/j.str.2012.04.004
  • Primary Citation of Related Structures:  
    5Z2Q

  • PubMed Abstract: 

    The structure of the complex between the transcription cofactor Vgll1 and the transcription factor TEAD4, the mammalian equivalent of the Drosophila Vestigial and Scalloped, respectively, is determined in this study. Remarkably, Vgll1 interacts with TEAD in a manner similar to the transcription coactivators, as well as oncogenes YAP and TAZ, despite having a varied primary sequence. Vgll1-TEAD complex upregulates the expression of IGFBP-5, a proliferation-promoting gene, and facilitates anchorage-independent cell proliferation. The YAP/TAZ-TEAD complex also upregulates several other proliferation-promoting genes and also promotes anchorage-independent cell proliferation. Given its structural and functional similarity to YAP/TAZ, Vgll1 has the potential to promote cancer progression.


  • Organizational Affiliation

    Cell Biology in Health and Disease Division, Institute of Molecular and Cell Biology, Proteos, Singapore 138673. ajaybabuvp@imcb.a-star.edu.sg


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription cofactor vestigial-like protein 1A [auth C]48Mus musculusMutation(s): 0 
Gene Names: Vgll1
UniProt
Find proteins for Q99NC0 (Mus musculus)
Explore Q99NC0 
Go to UniProtKB:  Q99NC0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ99NC0
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription cofactor vestigial-like protein 1B [auth D]49Mus musculusMutation(s): 0 
Gene Names: Vgll1
UniProt
Find proteins for Q99NC0 (Mus musculus)
Explore Q99NC0 
Go to UniProtKB:  Q99NC0
Entity Groups  
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UniProt GroupQ99NC0
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Transcriptional enhancer factor TEF-3C [auth A]226Mus musculusMutation(s): 0 
Gene Names: Tead4Tcf13r1Tef3Tefr1
UniProt
Find proteins for Q62296 (Mus musculus)
Explore Q62296 
Go to UniProtKB:  Q62296
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UniProt GroupQ62296
Sequence Annotations
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Transcriptional enhancer factor TEF-3D [auth B]228Mus musculusMutation(s): 0 
Gene Names: Tead4Tcf13r1Tef3Tefr1
UniProt
Find proteins for Q62296 (Mus musculus)
Explore Q62296 
Go to UniProtKB:  Q62296
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ62296
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download Ideal Coordinates CCD File 
E [auth B]PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.74 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.203 
  • Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 113.931α = 90
b = 113.931β = 90
c = 144.357γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-01-31
    Type: Initial release
  • Version 1.1: 2023-11-22
    Changes: Data collection, Database references, Refinement description