Download MendeleyCrystal Structures Of E.Coli Arginyl-Trna Synthetase (Argrs) In Complex With Substrates
Zhou, M., Ye, S., Stephen, P., Zhang, R.G., Wang, E.D., Giege, R., Lin, S.X.To be published.
5YYM
Crystal structures of E.coli arginyl-trna synthetase (argrs) in complex with substrate Arg
- PDB DOI: 10.2210/pdb5YYM/pdb
- Classification: LIGASE
- Organism(s): Escherichia coli K-12
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2017-12-10 Released: 2018-12-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.251
- R-Value Work: 0.197
- R-Value Observed: 0.199
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Arginine--tRNA ligase | A, B | 586 | Escherichia coli K-12 | Mutation(s): 0 Gene Names: argS, b1876, JW1865 EC: 6.1.1.19 |  |
UniProt | |||||
Find proteins for P11875 (Escherichia coli (strain K12)) Explore P11875 Go to UniProtKB: P11875 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P11875 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ARG (Subject of Investigation/LOI) Query on ARG | C [auth A], D [auth B] | ARGININE C6 H15 N4 O2 ODKSFYDXXFIFQN-BYPYZUCNSA-O |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.251
- R-Value Work: 0.197
- R-Value Observed: 0.199
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 49.727 | α = 90 |
| b = 244.51 | β = 90.69 |
| c = 52.46 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
Entry History
Deposition Data
- Released Date: 2018-12-12 Deposition Author(s): Zhou, M., Ye, S., Stephen, P., Zhang, R.G., Wang, E.D., Giege, R., Lin, S.X.
Revision History (Full details and data files)
- Version 1.0: 2018-12-12
Type: Initial release
