Download MendeleyX-ray Crystal Structure of Pseudoazurin Thr36Lys Variant
Yamaguchi, T., Sakai, C., Kohzuma, T.To be published.
5YW3
X-ray Crystal Structure of Pseudoazurin Thr36Lys Variant
- PDB DOI: https://doi.org/10.2210/pdb5YW3/pdb
- Classification: ELECTRON TRANSPORT
- Organism(s): Achromobacter cycloclastes
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2017-11-28 Released: 2018-11-28
- Funding Organization(s): Japan Society for the Promotion of Science
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.19 Å
- R-Value Free: 0.173
- R-Value Work: 0.127
- R-Value Observed: 0.129
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Pseudoazurin | 124 | Achromobacter cycloclastes | Mutation(s): 1 Gene Names: bcp |  | |
UniProt | |||||
Find proteins for P19567 (Achromobacter cycloclastes) Explore P19567 Go to UniProtKB: P19567 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P19567 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CU Query on CU | E [auth A], F [auth B], H [auth C], J [auth D] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N |  | ||
| CL Query on CL | G [auth B], I [auth C], K [auth D] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.19 Å
- R-Value Free: 0.173
- R-Value Work: 0.127
- R-Value Observed: 0.129
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 34.699 | α = 88.88 |
| b = 51.227 | β = 77.16 |
| c = 57.723 | γ = 86.58 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data scaling |
| MOLREP | phasing |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-11-28 Deposition Author(s): Sakai, C., Yamaguchi, T., Kohzuma, T.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Japan Society for the Promotion of Science | Japan | 22550145 |
Revision History (Full details and data files)
- Version 1.0: 2018-11-28
Type: Initial release - Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description
