5YS7 | pdb_00005ys7

Crystal structure of an OspA mutant

• PDB DOI: https://doi.org/10.2210/pdb5YS7/pdb

• Classification: DE NOVO PROTEIN
• Organism(s): Borreliella burgdorferi
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2017-11-13 Released: 2018-11-14 
• Deposition Author(s): Takada, S., Makabe, K.

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 
  0.260 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.196 (Depositor), 0.200 (DCC) 
• R-Value Observed: 
  0.199 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of an OspA mutant

Takada, S., Makabe, K.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 34.54 kDa 
• Atom Count: 2,659 
• Modeled Residue Count: 315 
• Deposited Residue Count: 320 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Outer Surface Protein A	A	320	Borreliella burgdorferi	Mutation(s): 5
UniProt
Find proteins for D0VWU8 (Borreliella burgdorferi) Explore D0VWU8  Go to UniProtKB:  D0VWU8

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free:  0.260 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.196 (Depositor), 0.200 (DCC) 
• R-Value Observed: 0.199 (Depositor) 

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 85.279	α = 90
b = 107.988	β = 90
c = 36.29	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2018-11-14 
Deposition Author(s): Takada, S., Makabe, K.

Revision History  

• Version 1.0: 2018-11-14
  Type: Initial release
  
• Version 1.1: 2023-11-22
  Changes: Data collection, Database references, Refinement description