5YFP

Cryo-EM Structure of the Exocyst Complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Cryo-EM structure of the exocyst complex

Mei, K.Li, Y.Wang, S.Shao, G.Wang, J.Ding, Y.Luo, G.Yue, P.Liu, J.J.Wang, X.Dong, M.Q.Wang, H.W.Guo, W.

(2018) Nat Struct Mol Biol 25: 139-146

  • DOI: 10.1038/s41594-017-0016-2
  • Primary Citation of Related Structures:  
    5YFP

  • PubMed Abstract: 
  • The exocyst is an evolutionarily conserved octameric protein complex that mediates the tethering of post-Golgi secretory vesicles to the plasma membrane during exocytosis and is implicated in many cellular processes such as cell polarization, cytokinesis, ciliogenesis and tumor invasion ...

    The exocyst is an evolutionarily conserved octameric protein complex that mediates the tethering of post-Golgi secretory vesicles to the plasma membrane during exocytosis and is implicated in many cellular processes such as cell polarization, cytokinesis, ciliogenesis and tumor invasion. Using cryo-EM and chemical cross-linking MS (CXMS), we solved the structure of the Saccharomyces cerevisiae exocyst complex at an average resolution of 4.4 Å. Our model revealed the architecture of the exocyst and led to the identification of the helical bundles that mediate the assembly of the complex at its core. Sequence analysis suggests that these regions are evolutionarily conserved across eukaryotic systems. Additional cell biological data suggest a mechanism for exocyst assembly that leads to vesicle tethering at the plasma membrane.


    Organizational Affiliation

    Department of Biology, University of Pennsylvania, Philadelphia, PA, USA. guowei@sas.upenn.edu.



Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Exocyst complex component SEC3A1336Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: SEC3PSL1YER008C
UniProt
Find proteins for P33332 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  P33332
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UniProt GroupP33332
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Exocyst complex component SEC5B971Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: SEC5YDR166CYD8358.20CYD9489.01C
UniProt
Find proteins for P89102 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Exocyst complex component SEC6C805Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: SEC6YIL068C
UniProt
Find proteins for P32844 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Exocyst complex component SEC8D1065Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: SEC8YPR055WYP9499.11
UniProt
Find proteins for P32855 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Exocyst complex component SEC10E871Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: SEC10YLR166CL9362.12
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UniProt GroupQ06245
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
Exocyst complex component SEC15F910Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: SEC15YGL233W
UniProt
Find proteins for P22224 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
Exocyst complex component EXO70G623Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: EXO70YJL085WJ0932
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UniProt GroupP19658
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
Exocyst complex component EXO84H753Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: EXO84USA3YBR102CYBR0831
UniProt
Find proteins for P38261 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation of ChinaChina31530018
Beijing Municipal Science & Technology CommissionChinaZ161100000116034
National Key Research and Development Program of MOSTChina2016YFA0501100
National Institute of HealthUnited StatesR01GM111128

Revision History  (Full details and data files)

  • Version 1.0: 2018-01-31
    Type: Initial release
  • Version 1.1: 2018-02-21
    Changes: Database references
  • Version 1.2: 2019-11-06
    Changes: Data collection, Other