5Y6I | pdb_00005y6i

Crystal structure of Pseudomonas aeruginosa HmgR

PDB DOI: https://doi.org/10.2210/pdb5Y6I/pdb

Classification: TRANSCRIPTION
Organism(s): Pseudomonas aeruginosa
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-08-11 Released: 2018-08-15
Deposition Author(s): Gu, T., Ji, Q., Liang, H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.52 Å
R-Value Free:
0.295 (Depositor), 0.298 (DCC)
R-Value Work:
0.237 (Depositor), 0.243 (DCC)
R-Value Observed:
0.240 (Depositor)

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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Pseudomonas aeruginosa HmgR

Gu, T., Ji, Q., Liang, H.

To be published.

Macromolecule Content

Total Structure Weight: 56.02 kDa
Atom Count: 3,528
Modeled Residue Count: 477
Deposited Residue Count: 534
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcriptional regulator KdgR	A, B	267	Pseudomonas aeruginosa	Mutation(s): 0 Gene Names: kdgR_2, AOY09_03044, PAERUG_P32_London_17_VIM_2_10_11_04319
UniProt
Find proteins for Q9I2A1 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9I2A1 Go to UniProtKB: Q9I2A1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9I2A1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.52 Å
R-Value Free: 0.295 (Depositor), 0.298 (DCC)
R-Value Work: 0.237 (Depositor), 0.243 (DCC)
R-Value Observed: 0.240 (Depositor)

Space Group: P 2₁ 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 60.129	α = 90
b = 80.52	β = 90
c = 116.755	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2018-08-15

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2018-08-15
Type: Initial release
Version 1.1: 2024-03-27
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.