5Y5C | pdb_00005y5c

Crystal structure of dha bind to bovine beta-lactoglobulin

• PDB DOI: https://doi.org/10.2210/pdb5Y5C/pdb

• Classification: LIPID BINDING PROTEIN
• Organism(s): Bos taurus
• Mutation(s): No 


• Deposited: 2017-08-08 Released: 2018-08-08 
• Deposition Author(s): Jiang, L., Liu, J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.61 Å
• R-Value Free: 
  0.244 (Depositor), 0.240 (DCC) 
• R-Value Work: 
  0.200 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.202 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of dha bind to bovine beta-lactoglobulin

Jiang, L., Liu, J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 37.26 kDa 
• Atom Count: 2,531 
• Modeled Residue Count: 317 
• Deposited Residue Count: 324 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Beta-lactoglobulin	A, B	162	Bos taurus	Mutation(s): 0
UniProt
Find proteins for P02754 (Bos taurus) Explore P02754  Go to UniProtKB:  P02754

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
HXA (Subject of Investigation/LOI)	C [auth B], D [auth B]	DOCOSA-4,7,10,13,16,19-HEXAENOIC ACID C22 H32 O2 MBMBGCFOFBJSGT-KUBAVDMBSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.61 Å
• R-Value Free:  0.244 (Depositor), 0.240 (DCC) 
• R-Value Work:  0.200 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.202 (Depositor) 

Space Group: P 3₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 52.49	α = 90
b = 52.49	β = 90
c = 108.39	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
BALBES	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2018-08-08 
Deposition Author(s): Jiang, L., Liu, J.

Revision History  

• Version 1.0: 2018-08-08
  Type: Initial release
  
• Version 1.1: 2023-11-22
  Changes: Data collection, Database references, Refinement description
• Version 1.2: 2024-10-23
  Changes: Structure summary