5Y2U

X-ray structure of Phosphoglycerate Mutase 1(PGAM1) complexed with a small molecule


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.200 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

X-ray structure of Phosphoglycerate Mutase 1(PGAM1) complexed with a small molecule

Zhou, L.Jiang, L.L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Phosphoglycerate mutase 1
B, C
262Homo sapiensMutation(s): 0 
Gene Names: PGAM1 (PGAMA)
EC: 5.4.2.11, 5.4.2.4
Find proteins for P18669 (Homo sapiens)
Go to Gene View: PGAM1
Go to UniProtKB:  P18669
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
AZN
Query on AZN

Download SDF File 
Download CCD File 
B, C
ALIZARIN RED
C14 H8 O7 S
JKYKXTRKURYNGW-UHFFFAOYSA-N
 Ligand Interaction
MES
Query on MES

Download SDF File 
Download CCD File 
C
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.200 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 82.640α = 90.00
b = 85.267β = 90.00
c = 102.466γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
PHENIXrefinement
SCALEPACKdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2017-07-27 
  • Released Date: 2018-08-08 
  • Deposition Author(s): Jiang, L.L., Zhou, L.

Revision History 

  • Version 1.0: 2018-08-08
    Type: Initial release