Download MendeleyConformational Flexibility of Plastic Interface Loop Allows Entropic Adaptation of Urate Oxidase to Environmental pH.
Hibi, T., Itoh, T., Fukada, H., Kishimoto, T., Nishiya, Y.To be published.
5Y2P
Crystal Structure of Bacillus sp. TB-90 Urate Oxidase Improved by Humidity Control at 89% RH
- PDB DOI: https://doi.org/10.2210/pdb5Y2P/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Bacillus sp. TB-90
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2017-07-26 Released: 2018-08-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.177
- R-Value Work: 0.157
- R-Value Observed: 0.158
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uric acid degradation bifunctional protein | 312 | Bacillus sp. TB-90 | Mutation(s): 0 Gene Names: uao EC: 1.7.3.3 |  | |
UniProt | |||||
Find proteins for Q45697 (Bacillus sp. (strain TB-90)) Explore Q45697 Go to UniProtKB: Q45697 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q45697 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| AZA Query on AZA | C [auth A], H [auth B] | 8-AZAXANTHINE C4 H3 N5 O2 KVGVQTOQSNJTJI-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| EDO Query on EDO | F [auth A] G [auth A] K [auth B] L [auth B] M [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| K Query on K | J [auth B] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
| OXY Query on OXY | D [auth A], I [auth B] | OXYGEN MOLECULE O2 MYMOFIZGZYHOMD-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| OCS Query on OCS | A, B | L-PEPTIDE LINKING | C3 H7 N O5 S |  | CYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.177
- R-Value Work: 0.157
- R-Value Observed: 0.158
- Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 71.095 | α = 90 |
| b = 133.885 | β = 90 |
| c = 145.797 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2018-08-08 Deposition Author(s): Itoh, T., Nishiya, Y.
Revision History (Full details and data files)
- Version 1.0: 2018-08-08
Type: Initial release - Version 1.1: 2020-09-02
Changes: Derived calculations, Structure summary - Version 1.2: 2023-11-22
Changes: Data collection, Database references, Refinement description
