Download MendeleyPurification,crystallization and structural analysis of cytoplastic acetoacetyl-CoA thiolase from Saccharomyces cerevisiae
Zhou, P.F.To be published.
5XYJ
Purification,crystallization and structural analysis of cytoplastic acetoacetyl-CoA thiolase from Saccharomyces cerevisiae
- PDB DOI: https://doi.org/10.2210/pdb5XYJ/pdb
- Classification: TRANSFERASE
- Organism(s): Saccharomyces cerevisiae S288C
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2017-07-08 Released: 2018-07-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.93 Å
- R-Value Free: 0.172
- R-Value Work: 0.156
- R-Value Observed: 0.157
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Acetyl-CoA acetyltransferase | A [auth B], B [auth A] | 408 | Saccharomyces cerevisiae S288C | Mutation(s): 1 Gene Names: ERG10, YPL028W, LPB3 EC: 2.3.1.9 |  |
UniProt | |||||
Find proteins for P41338 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P41338 Go to UniProtKB: P41338 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P41338 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | C [auth B], D [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.93 Å
- R-Value Free: 0.172
- R-Value Work: 0.156
- R-Value Observed: 0.157
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 78.804 | α = 90 |
| b = 89.25 | β = 90 |
| c = 119.189 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-2000 | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2018-07-11 Deposition Author(s): Zhou, P.F.
Revision History (Full details and data files)
- Version 1.0: 2018-07-11
Type: Initial release - Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description
