5XRC | pdb_00005xrc

A Trimodular GH5_4 Subfamily Endoglucanase Structure with Large Unit Cell

PDB DOI: https://doi.org/10.2210/pdb5XRC/pdb

Classification: HYDROLASE
Organism(s): Bacillus sp. BG-CS10
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-06-08 Released: 2019-02-27
Deposition Author(s): Zhang, H.D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free:
0.332 (Depositor), 0.279 (DCC)
R-Value Work:
0.276 (Depositor)
R-Value Observed:
0.279 (Depositor)

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This is version 1.1 of the entry. See complete history.

Literature

Molecular Characterization of a Trimodular GH5_4 Subfamily Endoglucanase Structure with Large Unit Cell

Zhang, H.D., Yao, C.X.

To be published.

Macromolecule Content

Total Structure Weight: 200.45 kDa
Atom Count: 12,970
Modeled Residue Count: 1,593
Deposited Residue Count: 1,755
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cellulase	A, B, C	585	Bacillus sp. BG-CS10	Mutation(s): 0 EC: 3.2.1.4
UniProt
Find proteins for D4P8C6 (Bacillus sp. BG-CS10) Explore D4P8C6 Go to UniProtKB: D4P8C6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	D4P8C6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.332 (Depositor), 0.279 (DCC)
R-Value Work: 0.276 (Depositor)
R-Value Observed: 0.279 (Depositor)

Space Group: I 4 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 120.144	α = 90
b = 120.144	β = 90
c = 615.337	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2019-02-27

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2019-02-27
Type: Initial release
Version 1.1: 2024-03-27
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.