5X6E

Crystal structure of PrfA-DNA binary complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.99 Å
  • R-Value Free: 0.300 
  • R-Value Work: 0.249 
  • R-Value Observed: 0.252 

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Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Structural insights into glutathione-mediated activation of the master regulator PrfA in Listeria monocytogenes

Wang, Y.Feng, H.Zhu, Y.Gao, P.

(2017) Protein Cell 8: 308-312


Macromolecules

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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Listeriolysin positive regulatory factor A237Listeria monocytogenesMutation(s): 0 
Gene Names: prfAAJL40_05990AJN46_04535M643_11230
UniProt
Find proteins for P22262 (Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e))
Explore P22262 
Go to UniProtKB:  P22262
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP22262
Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsLengthOrganismImage
DNA (29-MER)G [auth C],
K [auth G],
C [auth O]
29Listeria monocytogenes
Protein Feature View
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  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChainsLengthOrganismImage
DNA (28-MER)H [auth D],
L [auth H],
D [auth P]
29Listeria monocytogenes
Protein Feature View
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  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.99 Å
  • R-Value Free: 0.300 
  • R-Value Work: 0.249 
  • R-Value Observed: 0.252 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 65.017α = 90
b = 96.59β = 90
c = 370.528γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
Cootmodel building

Structure Validation

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Ligand Structure Quality Assessment 



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2017-04-12
    Type: Initial release