5WRN

Human thymidylate synthase complexed with dCMP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.39 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.188 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Human thymidylate synthase complexed with dCMP

Almqvist, H.Axelsson, H.Jafari, R.Chen, D.Mateus, A.Haraldsson, M.Larsson, A.Martinez Molina, D.Artursson, P.Lundback, T.Nordlund, P.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Thymidylate synthase
B, A, C, D, E, F
289Homo sapiensMutation(s): 0 
Gene Names: TYMS (TS)
EC: 2.1.1.45
Find proteins for P04818 (Homo sapiens)
Go to Gene View: TYMS
Go to UniProtKB:  P04818
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
DC
Query on DC

Download SDF File 
Download CCD File 
A, B, C, D, E, F
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
C9 H14 N3 O7 P
NCMVOABPESMRCP-SHYZEUOFSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.39 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.188 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 110.096α = 90.00
b = 110.096β = 90.00
c = 317.268γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
HKLdata scaling
PHASERphasing
HKL-2000data collection
HKLdata reduction
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2016-12-02 
  • Released Date: 2016-12-14 
  • Deposition Author(s): Chen, D., Nordlund, P.

Funding OrganizationLocationGrant Number
Nanyang Technological UniversitySingaporeM060080004.70301200

Revision History 

  • Version 1.0: 2016-12-14
    Type: Initial release