5WOF | pdb_00005wof

1.65 ANGSTROM STRUCTURE OF THE DYNEIN LIGHT CHAIN 1 FROM PLASMODIUM FALCIPARUM

• PDB DOI: https://doi.org/10.2210/pdb5WOF/pdb
• Entry: 5WOF supersedes: 1YO3

• Classification: TRANSPORT PROTEIN
• Organism(s): Plasmodium falciparum 3D7
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2017-08-02 Released: 2017-08-16 
• Deposition Author(s): Walker, J.R., Lew, J., Amani, M., Alam, Z., Wasney, G., Boulanger, K., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Hui, R., Botchkarev, A., Vedadi, M., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.65 Å
• R-Value Free: 
  0.203 (Depositor), 0.209 (DCC) 
• R-Value Work: 
  0.174 (Depositor), 0.184 (DCC) 
• R-Value Observed: 
  0.176 (Depositor) 

Starting Model: experimental

Literature

Genome-scale Protein Expression and Structural Biology of Plasmodium Falciparum and Related Apicomplexan Organisms.

Vedadi, M., Lew, J., Artz, J., Amani, M., Zhao, Y., Dong, A., Wasney, G.A., Gao, M., Hills, T., Brokx, S., Qui, W., Sharma, S., Diassiti, A., Alam, Z., Melone, M., Mulichak, A., Wernimont, A., Bray, J., Loppnau, P., Plotnikova, O., Newberry, K., Sundararajan, E., Houston, S., Walker, J., Tempel, W., Bochkarev, A., Kozieradzki, I., Edwards, A., Arrowsmith, C., Roos, D., Kain, K., Hui, R.

(2007) Mol Biochem Parasitol 151: 100-110

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 35.08 kDa 
• Atom Count: 2,484 
• Modeled Residue Count: 254 
• Deposited Residue Count: 306 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Dynein light chain 1, putative	A, B, C	102	Plasmodium falciparum 3D7	Mutation(s): 0  Gene Names: PF3D7_1213600, PFL0660w
UniProt
Find proteins for Q8I5R9 (Plasmodium falciparum (isolate 3D7)) Explore Q8I5R9  Go to UniProtKB:  Q8I5R9

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.65 Å
• R-Value Free:  0.203 (Depositor), 0.209 (DCC) 
• R-Value Work:  0.174 (Depositor), 0.184 (DCC) 
• R-Value Observed: 0.176 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 68.92	α = 90
b = 108.088	β = 115.11
c = 43.883	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data reduction
SCALEPACK	data scaling
PHASER	phasing
BUSTER	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-08-16 
Deposition Author(s): Walker, J.R., Lew, J., Amani, M., Alam, Z., Wasney, G., Boulanger, K., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Hui, R., Botchkarev, A., Vedadi, M., Structural Genomics Consortium (SGC)
• This entry supersedes: 1YO3

Revision History  

• Version 1.0: 2017-08-16
  Type: Initial release
  
• Version 1.1: 2023-10-04
  Changes: Data collection, Database references, Refinement description