5WH9 | pdb_00005wh9

Structure of BH1999 gentisyl-coenzyme A thioesterase

• PDB DOI: https://doi.org/10.2210/pdb5WH9/pdb

• Classification: HYDROLASE
• Organism(s): Halalkalibacterium halodurans C-125
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2017-07-16 Released: 2018-10-10 
• Deposition Author(s): Finci, L.I., Allen, K.N.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 
  0.264 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.221 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.223 (Depositor) 

Starting Model: experimental

Literature

Structure of BH1999 gentisyl-coenzyme A thioesterase

Finci, L.I., Allen, K.N.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 63.05 kDa 
• Atom Count: 4,170 
• Modeled Residue Count: 491 
• Deposited Residue Count: 552 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
4-hydroxybenzoyl-CoA thioesterase	A, B, C, D	138	Halalkalibacterium halodurans C-125	Mutation(s): 0  Gene Names: BH1999
UniProt
Find proteins for Q9KBC9 (Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)) Explore Q9KBC9  Go to UniProtKB:  Q9KBC9

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free:  0.264 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.221 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.223 (Depositor) 

Space Group: P 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.656	α = 90
b = 80.758	β = 90
c = 120.282	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
SAINT	data reduction
PROTEUM PLUS	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2018-10-10 
Deposition Author(s): Finci, L.I., Allen, K.N.

Revision History  

• Version 1.0: 2018-10-10
  Type: Initial release
  
• Version 1.1: 2023-10-04
  Changes: Data collection, Database references, Refinement description, Structure summary
• Version 1.2: 2024-10-30
  Changes: Structure summary